Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 MYADML-201ENST00000474610 2147 ntBASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AC027237.1-201ENST00000560942 655 ntBASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AL021578.1-201ENST00000613646 709 ntBASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 AP001505.2-201ENST00000616815 443 ntBASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEDD1Q8NHV4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AL662890.1-201ENST00000396818 632 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 RN7SL11P-201ENST00000471305 293 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AC024681.1-201ENST00000521917 487 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CHMP4BP1-201ENST00000556017 588 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AL606495.2-201ENST00000605867 535 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AL157813.1-201ENST00000612996 587 ntBASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEDD1Q8NHV4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
NEDD1Q8NHV4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AC018629.1-201ENST00000623381 1736 ntBASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ST13P19-201ENST00000442505 1124 ntBASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AL596276.2-201ENST00000447525 331 ntBASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AL161670.2-201ENST00000557650 1227 ntBASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEDD1Q8NHV4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms