Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SYNE4Q8N205 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SYNE4Q8N205 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SYNE4Q8N205 FAM90A2P-201ENST00000511144 1395 ntBASIC18.28■□□□□ 0.52
SYNE4Q8N205 FAM90A25P-201ENST00000528404 1395 ntBASIC18.28■□□□□ 0.52
SYNE4Q8N205 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SYNE4Q8N205 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.28■□□□□ 0.52
SYNE4Q8N205 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SYNE4Q8N205 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SYNE4Q8N205 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.27■□□□□ 0.52
SYNE4Q8N205 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SYNE4Q8N205 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SYNE4Q8N205 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SYNE4Q8N205 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.27■□□□□ 0.51
SYNE4Q8N205 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SYNE4Q8N205 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.27■□□□□ 0.51
SYNE4Q8N205 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 RNA5SP359-201ENST00000364838 113 ntBASIC18.26■□□□□ 0.51
SYNE4Q8N205 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 TSPY25P-201ENST00000429463 745 ntBASIC18.26■□□□□ 0.51
SYNE4Q8N205 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 LINC01783-202ENST00000614408 828 ntBASIC18.26■□□□□ 0.51
SYNE4Q8N205 BX284668.2-205ENST00000619677 828 ntBASIC18.26■□□□□ 0.51
SYNE4Q8N205 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SYNE4Q8N205 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SYNE4Q8N205 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AP002414.2-201ENST00000591780 3365 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms