Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PDXDC2P-206ENST00000534700 1315 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 HDGF-202ENST00000368206 960 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A3P12111 SSR4P1-203ENST00000599569 2260 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 LTB4R2-202ENST00000528054 3092 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC14.89□□□□□ -0.03
COL6A3P12111 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A3P12111 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC14.89□□□□□ -0.03
COL6A3P12111 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A3P12111 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A3P12111 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 AC092850.2-201ENST00000623821 2697 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL6A3P12111 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 MGST3-204ENST00000367888 778 ntTSL 3 BASIC14.88□□□□□ -0.03
COL6A3P12111 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 FTLP3-201ENST00000427242 528 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
COL6A3P12111 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 AC005777.1-201ENST00000588332 187 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
COL6A3P12111 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 AGGF1P2-201ENST00000426656 2106 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC14.88□□□□□ -0.03
COL6A3P12111 AC233724.9-201ENST00000511694 407 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC14.88□□□□□ -0.03
COL6A3P12111 AP000845.1-201ENST00000581677 2131 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A3P12111 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A3P12111 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 AC008894.3-201ENST00000624324 3103 ntBASIC14.88□□□□□ -0.03
COL6A3P12111 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL6A3P12111 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL6A3P12111 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 AF186996.6-201ENST00000485294 149 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 TUBA3GP-201ENST00000410028 1325 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 KRT8P28-201ENST00000433288 1390 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
COL6A3P12111 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL6A3P12111 LINC00265-2P-201ENST00000413372 782 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC14.87□□□□□ -0.03
COL6A3P12111 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
COL6A3P12111 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms