Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.55■□□□□ 0.08
RB1P06400 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RB1P06400 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
RB1P06400 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.55■□□□□ 0.08
RB1P06400 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RB1P06400 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
RB1P06400 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
RB1P06400 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
RB1P06400 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
RB1P06400 WASH3P-207ENST00000560956 1394 ntBASIC15.54■□□□□ 0.08
RB1P06400 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
RB1P06400 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.54■□□□□ 0.08
RB1P06400 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.54■□□□□ 0.08
RB1P06400 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.54■□□□□ 0.08
RB1P06400 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.54■□□□□ 0.08
RB1P06400 AC084752.1-201ENST00000509766 622 ntBASIC15.54■□□□□ 0.08
RB1P06400 KRT8P1-201ENST00000557533 1207 ntBASIC15.54■□□□□ 0.08
RB1P06400 MIR4472-1-201ENST00000584349 80 ntBASIC15.54■□□□□ 0.08
RB1P06400 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 LINC00431-202ENST00000636375 159 ntBASIC15.54■□□□□ 0.08
RB1P06400 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.54■□□□□ 0.08
RB1P06400 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
RB1P06400 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.54■□□□□ 0.08
RB1P06400 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.54■□□□□ 0.08
RB1P06400 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RB1P06400 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.53■□□□□ 0.08
RB1P06400 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.53■□□□□ 0.08
RB1P06400 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RB1P06400 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RB1P06400 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.53■□□□□ 0.08
RB1P06400 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RB1P06400 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 GUSBP10-201ENST00000417412 665 ntBASIC15.53■□□□□ 0.08
RB1P06400 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 AL512306.1-201ENST00000432698 848 ntBASIC15.53■□□□□ 0.08
RB1P06400 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.53■□□□□ 0.08
RB1P06400 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 DPY19L2P5-201ENST00000456300 331 ntBASIC15.53■□□□□ 0.08
RB1P06400 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.53■□□□□ 0.08
RB1P06400 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC15.53■□□□□ 0.08
RB1P06400 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RB1P06400 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RB1P06400 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.53■□□□□ 0.08
RB1P06400 MROH4P-201ENST00000431302 1578 ntBASIC15.53■□□□□ 0.08
RB1P06400 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.53■□□□□ 0.08
RB1P06400 AL590440.2-201ENST00000641973 1595 ntBASIC15.53■□□□□ 0.08
RB1P06400 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RB1P06400 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms