Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PCM1-204ENST00000517730 2536 ntTSL 1 (best)15.51■□□□□ 0.072e-8■□□□□ 9.2
YBX3P16989 SYPL1-204ENST00000464029 1017 ntTSL 28.91□□□□□ -0.987e-8■□□□□ 9.2
YBX3P16989 SYPL1-203ENST00000460770 545 ntTSL 1 (best)5.36□□□□□ -1.557e-8■□□□□ 9.2
YBX3P16989 HSD17B11-207ENST00000513854 569 ntTSL 59.13□□□□□ -0.957e-8■□□□□ 9.2
YBX3P16989 HSD17B11-202ENST00000502576 571 ntTSL 26.3□□□□□ -1.47e-8■□□□□ 9.2
YBX3P16989 KHSRP-202ENST00000594496 999 ntTSL 225.25■■□□□ 1.633e-9■□□□□ 9.2
YBX3P16989 KHSRP-211ENST00000599642 428 ntTSL 222.61■■□□□ 1.213e-9■□□□□ 9.2
YBX3P16989 KHSRP-212ENST00000600480 851 ntTSL 220.94■□□□□ 0.943e-9■□□□□ 9.2
YBX3P16989 NDUFS2-214ENST00000496133 815 ntTSL 527.12■■□□□ 1.939e-12■□□□□ 9.2
YBX3P16989 DDX41-207ENST00000507900 1564 ntTSL 518.8■□□□□ 0.63e-8■□□□□ 9.2
YBX3P16989 CHCHD10-205ENST00000523865 490 ntTSL 211.81□□□□□ -0.522e-16■□□□□ 9.2
YBX3P16989 RAC2-206ENST00000469532 752 ntTSL 221.06■□□□□ 0.963e-8■□□□□ 9.2
YBX3P16989 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.495e-17■□□□□ 9.2
YBX3P16989 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC10.07□□□□□ -0.85e-17■□□□□ 9.2
YBX3P16989 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC11.69□□□□□ -0.547e-9■□□□□ 9.2
YBX3P16989 UQCRC2-201ENST00000268379 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.657e-9■□□□□ 9.2
YBX3P16989 UQCRC2-205ENST00000563898 1406 ntTSL 59.7□□□□□ -0.867e-9■□□□□ 9.2
YBX3P16989 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.875e-7■□□□□ 9.2
YBX3P16989 SENP2-206ENST00000453532 829 ntTSL 525.58■■□□□ 1.695e-7■□□□□ 9.2
YBX3P16989 SENP2-207ENST00000458551 553 ntTSL 425.3■■□□□ 1.645e-7■□□□□ 9.2
YBX3P16989 SENP2-204ENST00000439684 596 ntTSL 324.92■■□□□ 1.585e-7■□□□□ 9.2
YBX3P16989 ATG12-212ENST00000513322 1558 ntTSL 323.44■■□□□ 1.345e-7■□□□□ 9.2
YBX3P16989 NDUFC1-204ENST00000503453 682 ntTSL 322.62■■□□□ 1.214e-8■□□□□ 9.2
YBX3P16989 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.015e-7■□□□□ 9.2
YBX3P16989 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.754e-8■□□□□ 9.2
YBX3P16989 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.654e-8■□□□□ 9.2
YBX3P16989 NDUFC1-202ENST00000394225 664 ntTSL 219.09■□□□□ 0.654e-8■□□□□ 9.2
YBX3P16989 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.624e-8■□□□□ 9.2
YBX3P16989 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.534e-8■□□□□ 9.2
YBX3P16989 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.534e-8■□□□□ 9.2
YBX3P16989 ATG12-201ENST00000379594 1082 ntTSL 218.05■□□□□ 0.485e-7■□□□□ 9.2
YBX3P16989 SENP2-203ENST00000430355 878 ntTSL 516.91■□□□□ 0.35e-7■□□□□ 9.2
YBX3P16989 CAD-203ENST00000428460 953 ntTSL 516.75■□□□□ 0.275e-7■□□□□ 9.2
YBX3P16989 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.194e-8■□□□□ 9.2
YBX3P16989 NDUFC1-208ENST00000513022 564 ntTSL 415.91■□□□□ 0.144e-8■□□□□ 9.2
YBX3P16989 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.125e-7■□□□□ 9.2
YBX3P16989 AC068631.2-201ENST00000418776 501 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.025e-7■□□□□ 9.2
YBX3P16989 ATG12-210ENST00000513167 732 ntTSL 314.27□□□□□ -0.135e-7■□□□□ 9.2
YBX3P16989 PLCD1-209ENST00000495395 401 ntTSL 313.64□□□□□ -0.235e-7■□□□□ 9.2
YBX3P16989 NDUFC1-205ENST00000503997 628 ntTSL 313.47□□□□□ -0.254e-8■□□□□ 9.2
YBX3P16989 DNM2-213ENST00000589106 565 ntTSL 213.37□□□□□ -0.272e-10■□□□□ 9.2
YBX3P16989 SENP2-210ENST00000473760 738 ntTSL 212.14□□□□□ -0.475e-7■□□□□ 9.2
YBX3P16989 HYOU1-204ENST00000527738 809 ntTSL 211.34□□□□□ -0.592e-9■□□□□ 9.2
YBX3P16989 ATG12-213ENST00000514775 553 ntTSL 411.04□□□□□ -0.645e-7■□□□□ 9.2
YBX3P16989 ATG12-204ENST00000505993 773 ntTSL 310.58□□□□□ -0.725e-7■□□□□ 9.2
YBX3P16989 TANGO6-201ENST00000261778 4816 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.785e-7■□□□□ 9.2
YBX3P16989 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC9.96□□□□□ -0.825e-7■□□□□ 9.2
YBX3P16989 SSRP1-205ENST00000635721 675 ntTSL 58.83□□□□□ -15e-7■□□□□ 9.2
YBX3P16989 SENP2-209ENST00000465201 589 ntTSL 37.89□□□□□ -1.155e-7■□□□□ 9.2
YBX3P16989 DNAJB11-204ENST00000495390 4079 ntTSL 27.24□□□□□ -1.255e-7■□□□□ 9.2
YBX3P16989 DONSON-206ENST00000439593 528 ntTSL 36.25□□□□□ -1.415e-7■□□□□ 9.2
YBX3P16989 DONSON-212ENST00000460557 786 ntTSL 25.95□□□□□ -1.465e-7■□□□□ 9.2
YBX3P16989 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.65e-7■□□□□ 9.2
YBX3P16989 CDC34-205ENST00000606065 1062 ntTSL 529.71■■■□□ 2.352e-7■□□□□ 9.2
YBX3P16989 CDC34-207ENST00000607527 357 ntTSL 519.22■□□□□ 0.672e-7■□□□□ 9.2
YBX3P16989 PSMD10-201ENST00000217958 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.54e-7■□□□□ 9.2
YBX3P16989 PSMD10-205ENST00000372295 779 ntTSL 5 BASIC11.66□□□□□ -0.544e-7■□□□□ 9.2
YBX3P16989 PSMD10-203ENST00000340200 713 ntTSL 3 BASIC9.91□□□□□ -0.824e-7■□□□□ 9.2
YBX3P16989 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC9.09□□□□□ -0.954e-7■□□□□ 9.2
YBX3P16989 PSMD10-207ENST00000553388 1039 ntTSL 1 (best)9.03□□□□□ -0.964e-7■□□□□ 9.2
YBX3P16989 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC8.46□□□□□ -1.064e-7■□□□□ 9.2
YBX3P16989 PSMD10-202ENST00000338548 514 ntTSL 27.53□□□□□ -1.24e-7■□□□□ 9.2
YBX3P16989 EEF2K-204ENST00000568269 2367 ntTSL 1 (best)16.55■□□□□ 0.241e-6■□□□□ 9.2
YBX3P16989 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.371e-6■□□□□ 9.2
YBX3P16989 EEF2K-203ENST00000563555 610 ntTSL 58.5□□□□□ -1.051e-6■□□□□ 9.2
YBX3P16989 NHP2-203ENST00000502263 552 ntTSL 212.95□□□□□ -0.345e-11■□□□□ 9.2
YBX3P16989 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.61■■□□□ 1.213e-20■□□□□ 9.2
YBX3P16989 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.073e-20■□□□□ 9.2
YBX3P16989 TMEM141-205ENST00000484854 567 ntTSL 333.39■■■□□ 2.945e-7■□□□□ 9.2
YBX3P16989 IDI1-203ENST00000429642 1017 ntTSL 529.16■■■□□ 2.265e-7■□□□□ 9.2
YBX3P16989 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC26.57■■□□□ 1.845e-7■□□□□ 9.2
YBX3P16989 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.821e-6■□□□□ 9.2
YBX3P16989 COG4-206ENST00000530160 554 ntTSL 426.35■■□□□ 1.815e-7■□□□□ 9.2
YBX3P16989 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.55e-7■□□□□ 9.2
YBX3P16989 AGRN-208ENST00000479707 584 ntTSL 324.23■■□□□ 1.475e-7■□□□□ 9.2
YBX3P16989 CTU2-208ENST00000566637 1619 ntTSL 223.95■■□□□ 1.425e-7■□□□□ 9.2
YBX3P16989 SLC2A4RG-208ENST00000496425 502 ntTSL 223.9■■□□□ 1.425e-7■□□□□ 9.2
YBX3P16989 CTU2-204ENST00000564105 1586 ntTSL 1 (best)23.76■■□□□ 1.395e-7■□□□□ 9.2
YBX3P16989 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.381e-6■□□□□ 9.2
YBX3P16989 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.285e-7■□□□□ 9.2
YBX3P16989 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.255e-7■□□□□ 9.2
YBX3P16989 POLR3C-204ENST00000471254 1186 ntTSL 522.58■■□□□ 1.215e-7■□□□□ 9.2
YBX3P16989 GDI1-211ENST00000481304 1014 ntTSL 1 (best)22.38■■□□□ 1.175e-7■□□□□ 9.2
YBX3P16989 TMEM141-203ENST00000479737 491 ntTSL 222.29■■□□□ 1.165e-7■□□□□ 9.2
YBX3P16989 CSNK1D-225ENST00000584913 295 ntTSL 222.02■■□□□ 1.125e-7■□□□□ 9.2
YBX3P16989 MARCH6-211ENST00000512449 832 ntTSL 521.8■■□□□ 1.082e-10■□□□□ 9.2
YBX3P16989 GDI1-202ENST00000434049 816 ntTSL 520.58■□□□□ 0.895e-7■□□□□ 9.2
YBX3P16989 IDI1-204ENST00000482091 1029 ntTSL 520.06■□□□□ 0.85e-7■□□□□ 9.2
YBX3P16989 CTU2-203ENST00000562011 324 ntTSL 219.86■□□□□ 0.775e-7■□□□□ 9.2
YBX3P16989 CTU2-209ENST00000567316 452 ntTSL 319.14■□□□□ 0.655e-7■□□□□ 9.2
YBX3P16989 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC19.04■□□□□ 0.645e-7■□□□□ 9.2
YBX3P16989 CTU2-205ENST00000564584 896 ntTSL 318.79■□□□□ 0.65e-7■□□□□ 9.2
YBX3P16989 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.525e-7■□□□□ 9.2
YBX3P16989 PPP6R1-204ENST00000587457 2389 ntTSL 216.75■□□□□ 0.275e-7■□□□□ 9.2
YBX3P16989 TMEM141-206ENST00000489739 551 ntTSL 316.52■□□□□ 0.245e-7■□□□□ 9.2
YBX3P16989 GDI1-213ENST00000489589 918 ntTSL 216.26■□□□□ 0.195e-7■□□□□ 9.2
YBX3P16989 ZDHHC18-204ENST00000488397 1275 ntTSL 216.18■□□□□ 0.185e-7■□□□□ 9.2
YBX3P16989 CLNS1A-202ENST00000525064 1121 ntTSL 3 BASIC16.12■□□□□ 0.175e-7■□□□□ 9.2
YBX3P16989 CLNS1A-201ENST00000263309 1172 ntTSL 3 BASIC15.73■□□□□ 0.115e-7■□□□□ 9.2
YBX3P16989 AC010327.5-201ENST00000586923 3061 ntBASIC14.76□□□□□ -0.055e-7■□□□□ 9.2
Retrieved 100 of 29,075 protein–RNA pairs in 136.9 ms