Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
NKX2-3Q8TAU0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AC005912.2-201ENST00000619492 2400 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SDCCAG3P2-201ENST00000326105 1023 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AL136309.1-201ENST00000403917 691 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 NKAIN1P1-201ENST00000435754 582 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 IQSEC3P1-201ENST00000538799 536 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 BX088702.1-201ENST00000610784 235 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 ZACNP1-201ENST00000612259 710 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 AC100757.4-201ENST00000626934 759 ntBASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX2-3Q8TAU0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 TUBBP5-203ENST00000508529 1334 ntBASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 PKD1P1-201ENST00000458669 6805 ntBASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 TLE1P1-201ENST00000422965 589 ntBASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 AC044849.1-201ENST00000519737 1188 ntBASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 AC009955.4-201ENST00000597192 544 ntBASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX2-3Q8TAU0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX2-3Q8TAU0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NKX2-3Q8TAU0 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NKX2-3Q8TAU0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms