Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 MIR4746-201ENST00000579802 71 ntBASIC17.02■□□□□ 0.31
SCN4AP35499 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.02■□□□□ 0.31
SCN4AP35499 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 AC007952.5-201ENST00000572818 1486 ntBASIC17.02■□□□□ 0.31
SCN4AP35499 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SCN4AP35499 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 AC008536.3-201ENST00000623282 1599 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 RN7SL375P-201ENST00000492442 298 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 RN7SKP155-201ENST00000516031 288 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 MIR4254-201ENST00000581063 76 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17.01■□□□□ 0.31
SCN4AP35499 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 AL009176.1-201ENST00000607876 650 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SCN4AP35499 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SCN4AP35499 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SCN4AP35499 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.01■□□□□ 0.31
SCN4AP35499 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.01■□□□□ 0.31
SCN4AP35499 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SCN4AP35499 AC026691.1-201ENST00000602502 2017 ntBASIC17.01■□□□□ 0.31
SCN4AP35499 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SCN4AP35499 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
SCN4AP35499 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC17■□□□□ 0.31
SCN4AP35499 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 HNRNPA1P25-201ENST00000422644 937 ntBASIC17■□□□□ 0.31
SCN4AP35499 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 AC079414.2-201ENST00000567157 1104 ntBASIC17■□□□□ 0.31
SCN4AP35499 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17■□□□□ 0.31
SCN4AP35499 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17■□□□□ 0.31
SCN4AP35499 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17■□□□□ 0.31
SCN4AP35499 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SCN4AP35499 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 AL008638.4-201ENST00000624792 1315 ntBASIC17■□□□□ 0.31
SCN4AP35499 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17■□□□□ 0.31
SCN4AP35499 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SCN4AP35499 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17■□□□□ 0.31
SCN4AP35499 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17■□□□□ 0.31
SCN4AP35499 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SCN4AP35499 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.99■□□□□ 0.31
SCN4AP35499 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms