Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.67■□□□□ 0.1
APOEP02649 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.67■□□□□ 0.1
APOEP02649 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 FO681548.1-201ENST00000455617 1132 ntBASIC15.67■□□□□ 0.1
APOEP02649 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.67■□□□□ 0.1
APOEP02649 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 AC005912.2-201ENST00000619492 2400 ntBASIC15.67■□□□□ 0.1
APOEP02649 AL354989.2-201ENST00000435838 1540 ntBASIC15.67■□□□□ 0.1
APOEP02649 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
APOEP02649 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 CD8B2-202ENST00000417670 633 ntBASIC15.66■□□□□ 0.1
APOEP02649 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.66■□□□□ 0.1
APOEP02649 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.66■□□□□ 0.1
APOEP02649 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.66■□□□□ 0.1
APOEP02649 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 AL008721.1-201ENST00000609964 604 ntBASIC15.66■□□□□ 0.1
APOEP02649 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.66■□□□□ 0.1
APOEP02649 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.66■□□□□ 0.1
APOEP02649 AC006453.4-201ENST00000636949 1252 ntBASIC15.66■□□□□ 0.1
APOEP02649 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.66■□□□□ 0.1
APOEP02649 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
APOEP02649 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOEP02649 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.65■□□□□ 0.1
APOEP02649 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.65■□□□□ 0.1
APOEP02649 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.65■□□□□ 0.1
APOEP02649 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOEP02649 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms