Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
CFAP54Q96N23 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.77■■□□□ 1.24
CFAP54Q96N23 AC142086.2-201ENST00000569753 217 ntBASIC22.77■■□□□ 1.24
CFAP54Q96N23 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.77■■□□□ 1.24
CFAP54Q96N23 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.77■■□□□ 1.23
CFAP54Q96N23 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CFAP54Q96N23 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CFAP54Q96N23 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
CFAP54Q96N23 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CFAP54Q96N23 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CFAP54Q96N23 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CFAP54Q96N23 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.75■■□□□ 1.23
CFAP54Q96N23 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CFAP54Q96N23 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
CFAP54Q96N23 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CFAP54Q96N23 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.74■■□□□ 1.23
CFAP54Q96N23 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CFAP54Q96N23 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.74■■□□□ 1.23
CFAP54Q96N23 AC099791.2-201ENST00000605725 427 ntBASIC22.74■■□□□ 1.23
CFAP54Q96N23 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.74■■□□□ 1.23
CFAP54Q96N23 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.73■■□□□ 1.23
CFAP54Q96N23 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
CFAP54Q96N23 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC22.73■■□□□ 1.23
CFAP54Q96N23 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CFAP54Q96N23 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
CFAP54Q96N23 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.73■■□□□ 1.23
CFAP54Q96N23 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CFAP54Q96N23 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CFAP54Q96N23 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 KRT18P6-201ENST00000555540 1265 ntBASIC22.72■■□□□ 1.23
CFAP54Q96N23 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
CFAP54Q96N23 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CFAP54Q96N23 TSPY26P-201ENST00000476365 1326 ntBASIC22.72■■□□□ 1.23
CFAP54Q96N23 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.72■■□□□ 1.23
CFAP54Q96N23 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CFAP54Q96N23 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.71■■□□□ 1.23
CFAP54Q96N23 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
CFAP54Q96N23 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.71■■□□□ 1.23
CFAP54Q96N23 AL109923.1-201ENST00000618799 583 ntBASIC22.71■■□□□ 1.23
CFAP54Q96N23 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.71■■□□□ 1.23
CFAP54Q96N23 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.71■■□□□ 1.23
CFAP54Q96N23 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CFAP54Q96N23 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CFAP54Q96N23 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
CFAP54Q96N23 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.7■■□□□ 1.22
CFAP54Q96N23 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CFAP54Q96N23 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.7■■□□□ 1.22
CFAP54Q96N23 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.7■■□□□ 1.22
CFAP54Q96N23 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CFAP54Q96N23 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CFAP54Q96N23 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CFAP54Q96N23 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.69■■□□□ 1.22
CFAP54Q96N23 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CFAP54Q96N23 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.68■■□□□ 1.22
CFAP54Q96N23 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.68■■□□□ 1.22
CFAP54Q96N23 KRT18P61-201ENST00000585825 1298 ntBASIC22.68■■□□□ 1.22
CFAP54Q96N23 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
CFAP54Q96N23 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CFAP54Q96N23 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.68■■□□□ 1.22
CFAP54Q96N23 AC245100.8-202ENST00000629247 1058 ntBASIC22.68■■□□□ 1.22
CFAP54Q96N23 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
CFAP54Q96N23 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CFAP54Q96N23 AC005703.6-201ENST00000623265 1329 ntBASIC22.67■■□□□ 1.22
CFAP54Q96N23 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.67■■□□□ 1.22
CFAP54Q96N23 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CFAP54Q96N23 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.67■■□□□ 1.22
CFAP54Q96N23 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
CFAP54Q96N23 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.67■■□□□ 1.22
CFAP54Q96N23 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.66■■□□□ 1.22
CFAP54Q96N23 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CFAP54Q96N23 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CFAP54Q96N23 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.66■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms