Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
USP48Q86UV5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
USP48Q86UV5 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.02■■■□□ 2.08
USP48Q86UV5 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
USP48Q86UV5 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
USP48Q86UV5 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.01■■■□□ 2.08
USP48Q86UV5 AC142381.3-201ENST00000568208 1670 ntBASIC28.01■■■□□ 2.07
USP48Q86UV5 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
USP48Q86UV5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
USP48Q86UV5 AL162430.1-201ENST00000480705 870 ntBASIC28.01■■■□□ 2.07
USP48Q86UV5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.07
USP48Q86UV5 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
USP48Q86UV5 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
USP48Q86UV5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
USP48Q86UV5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28■■■□□ 2.07
USP48Q86UV5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28■■■□□ 2.07
USP48Q86UV5 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
USP48Q86UV5 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28■■■□□ 2.07
USP48Q86UV5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28■■■□□ 2.07
USP48Q86UV5 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
USP48Q86UV5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC27.99■■■□□ 2.07
USP48Q86UV5 AP001330.3-201ENST00000520123 633 ntBASIC27.99■■■□□ 2.07
USP48Q86UV5 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
USP48Q86UV5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC27.99■■■□□ 2.07
USP48Q86UV5 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
USP48Q86UV5 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
USP48Q86UV5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
USP48Q86UV5 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
USP48Q86UV5 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
USP48Q86UV5 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
USP48Q86UV5 THRA-202ENST00000394121 2260 ntTSL 2 BASIC27.98■■■□□ 2.07
USP48Q86UV5 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
USP48Q86UV5 AC022211.4-201ENST00000625094 2161 ntBASIC27.97■■■□□ 2.07
USP48Q86UV5 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.97■■■□□ 2.07
USP48Q86UV5 AC138932.3-201ENST00000567634 1902 ntBASIC27.97■■■□□ 2.07
USP48Q86UV5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC27.97■■■□□ 2.07
USP48Q86UV5 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.97■■■□□ 2.07
USP48Q86UV5 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USP48Q86UV5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USP48Q86UV5 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USP48Q86UV5 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP48Q86UV5 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.96■■■□□ 2.07
USP48Q86UV5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP48Q86UV5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC27.96■■■□□ 2.07
USP48Q86UV5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP48Q86UV5 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP48Q86UV5 FOXO3B-201ENST00000395675 1928 ntBASIC27.96■■■□□ 2.07
USP48Q86UV5 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.96■■■□□ 2.07
USP48Q86UV5 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
USP48Q86UV5 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
USP48Q86UV5 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.95■■■□□ 2.06
USP48Q86UV5 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP48Q86UV5 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP48Q86UV5 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
USP48Q86UV5 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP48Q86UV5 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
USP48Q86UV5 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
USP48Q86UV5 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
USP48Q86UV5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
USP48Q86UV5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC27.93■■■□□ 2.06
USP48Q86UV5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
USP48Q86UV5 AC091305.1-201ENST00000479476 895 ntBASIC27.93■■■□□ 2.06
USP48Q86UV5 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USP48Q86UV5 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
USP48Q86UV5 PREB-202ENST00000406567 1910 ntTSL 5 BASIC27.92■■■□□ 2.06
USP48Q86UV5 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP48Q86UV5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
USP48Q86UV5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC27.92■■■□□ 2.06
USP48Q86UV5 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC27.92■■■□□ 2.06
USP48Q86UV5 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP48Q86UV5 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 AC096887.2-201ENST00000623443 1957 ntBASIC27.91■■■□□ 2.06
USP48Q86UV5 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC27.91■■■□□ 2.06
USP48Q86UV5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 MAG-206ENST00000597035 542 ntTSL 4 BASIC27.91■■■□□ 2.06
USP48Q86UV5 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC27.91■■■□□ 2.06
USP48Q86UV5 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
USP48Q86UV5 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
USP48Q86UV5 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
USP48Q86UV5 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC27.9■■■□□ 2.06
USP48Q86UV5 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.9■■■□□ 2.06
USP48Q86UV5 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 AC004448.1-201ENST00000458332 883 ntBASIC27.9■■■□□ 2.06
USP48Q86UV5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USP48Q86UV5 AL139125.2-201ENST00000623134 1869 ntBASIC27.89■■■□□ 2.06
USP48Q86UV5 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC27.89■■■□□ 2.06
USP48Q86UV5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.89■■■□□ 2.06
USP48Q86UV5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
USP48Q86UV5 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms