Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM3Q53GG5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 AC133561.1-201ENST00000568600 2415 ntBASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 AC004812.2-201ENST00000611079 2094 ntBASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.8■□□□□ 0.6
PDLIM3Q53GG5 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM3Q53GG5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PDLIM3Q53GG5 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM3Q53GG5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM3Q53GG5 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.78■□□□□ 0.6
PDLIM3Q53GG5 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM3Q53GG5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.77■□□□□ 0.6
PDLIM3Q53GG5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PDLIM3Q53GG5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.77■□□□□ 0.59
PDLIM3Q53GG5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.77■□□□□ 0.59
PDLIM3Q53GG5 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PDLIM3Q53GG5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM3Q53GG5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 Z92544.1-202ENST00000571933 1220 ntBASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM3Q53GG5 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 DUSP8P5-201ENST00000422884 1815 ntBASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM3Q53GG5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 KRT18P10-201ENST00000388836 1287 ntBASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 AC068473.5-201ENST00000616428 2072 ntBASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PDLIM3Q53GG5 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms