Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AC103724.3-201ENST00000564481 992 ntBASIC20.13■□□□□ 0.81
SGCEO43556 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SGCEO43556 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.13■□□□□ 0.81
SGCEO43556 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SGCEO43556 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 ABCB10P4-201ENST00000566803 2184 ntBASIC20.12■□□□□ 0.81
SGCEO43556 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.12■□□□□ 0.81
SGCEO43556 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.12■□□□□ 0.81
SGCEO43556 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.12■□□□□ 0.81
SGCEO43556 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.12■□□□□ 0.81
SGCEO43556 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SGCEO43556 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SGCEO43556 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SGCEO43556 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SGCEO43556 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SGCEO43556 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.11■□□□□ 0.81
SGCEO43556 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SGCEO43556 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.11■□□□□ 0.81
SGCEO43556 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SGCEO43556 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SGCEO43556 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.1■□□□□ 0.81
SGCEO43556 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.1■□□□□ 0.81
SGCEO43556 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SGCEO43556 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SGCEO43556 AF131216.4-201ENST00000638924 1588 ntBASIC20.09■□□□□ 0.81
SGCEO43556 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.09■□□□□ 0.81
SGCEO43556 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SGCEO43556 AL031848.2-201ENST00000607670 837 ntBASIC20.09■□□□□ 0.81
SGCEO43556 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SGCEO43556 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.09■□□□□ 0.81
SGCEO43556 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SGCEO43556 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SGCEO43556 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SGCEO43556 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SGCEO43556 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.08■□□□□ 0.81
SGCEO43556 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SGCEO43556 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SGCEO43556 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SGCEO43556 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SGCEO43556 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SGCEO43556 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.08■□□□□ 0.81
SGCEO43556 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.08■□□□□ 0.81
SGCEO43556 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
SGCEO43556 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SGCEO43556 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SGCEO43556 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SGCEO43556 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 AC131274.2-201ENST00000580697 1507 ntBASIC20.07■□□□□ 0.8
SGCEO43556 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SGCEO43556 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.06■□□□□ 0.8
SGCEO43556 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.06■□□□□ 0.8
SGCEO43556 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SGCEO43556 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.06■□□□□ 0.8
SGCEO43556 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.05■□□□□ 0.8
SGCEO43556 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.05■□□□□ 0.8
SGCEO43556 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SGCEO43556 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SGCEO43556 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.04■□□□□ 0.8
SGCEO43556 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.04■□□□□ 0.8
SGCEO43556 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SGCEO43556 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SGCEO43556 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.04■□□□□ 0.8
SGCEO43556 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SGCEO43556 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SGCEO43556 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SGCEO43556 CLDN5-201ENST00000403084 2357 ntBASIC20.03■□□□□ 0.8
SGCEO43556 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 AC133561.1-201ENST00000568600 2415 ntBASIC20.03■□□□□ 0.8
SGCEO43556 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.03■□□□□ 0.8
SGCEO43556 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.03■□□□□ 0.8
SGCEO43556 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SGCEO43556 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms