Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH5O43196 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
MSH5O43196 AC026271.2-201ENST00000428091 497 ntBASIC30.55■■■□□ 2.48
MSH5O43196 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.55■■■□□ 2.48
MSH5O43196 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
MSH5O43196 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
MSH5O43196 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
MSH5O43196 AC106739.1-201ENST00000617035 715 ntBASIC30.54■■■□□ 2.48
MSH5O43196 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
MSH5O43196 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.54■■■□□ 2.48
MSH5O43196 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
MSH5O43196 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.53■■■□□ 2.48
MSH5O43196 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.53■■■□□ 2.48
MSH5O43196 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.53■■■□□ 2.48
MSH5O43196 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.53■■■□□ 2.48
MSH5O43196 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
MSH5O43196 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.53■■■□□ 2.48
MSH5O43196 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
MSH5O43196 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
MSH5O43196 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
MSH5O43196 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
MSH5O43196 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
MSH5O43196 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
MSH5O43196 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
MSH5O43196 AC135279.3-201ENST00000610945 1311 ntBASIC30.51■■■□□ 2.48
MSH5O43196 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
MSH5O43196 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH5O43196 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.51■■■□□ 2.47
MSH5O43196 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.51■■■□□ 2.47
MSH5O43196 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH5O43196 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH5O43196 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
MSH5O43196 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.5■■■□□ 2.47
MSH5O43196 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
MSH5O43196 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.5■■■□□ 2.47
MSH5O43196 KATNBL1P2-201ENST00000433311 835 ntBASIC30.5■■■□□ 2.47
MSH5O43196 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
MSH5O43196 MIR5787-201ENST00000611784 55 ntBASIC30.5■■■□□ 2.47
MSH5O43196 AL139125.2-201ENST00000623134 1869 ntBASIC30.5■■■□□ 2.47
MSH5O43196 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
MSH5O43196 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
MSH5O43196 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
MSH5O43196 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
MSH5O43196 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH5O43196 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.49■■■□□ 2.47
MSH5O43196 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.49■■■□□ 2.47
MSH5O43196 AL365223.1-201ENST00000574864 1297 ntBASIC30.49■■■□□ 2.47
MSH5O43196 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.49■■■□□ 2.47
MSH5O43196 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC30.49■■■□□ 2.47
MSH5O43196 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.48■■■□□ 2.47
MSH5O43196 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
MSH5O43196 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
MSH5O43196 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.48■■■□□ 2.47
MSH5O43196 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.48■■■□□ 2.47
MSH5O43196 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
MSH5O43196 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
MSH5O43196 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
MSH5O43196 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.47■■■□□ 2.47
MSH5O43196 CFTRP2-201ENST00000634304 199 ntBASIC30.47■■■□□ 2.47
MSH5O43196 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC30.47■■■□□ 2.47
MSH5O43196 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
MSH5O43196 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
MSH5O43196 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.47■■■□□ 2.47
MSH5O43196 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC30.46■■■□□ 2.47
MSH5O43196 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.46■■■□□ 2.47
MSH5O43196 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
MSH5O43196 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.46■■■□□ 2.47
MSH5O43196 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC30.46■■■□□ 2.47
MSH5O43196 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.46■■■□□ 2.47
MSH5O43196 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH5O43196 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC30.46■■■□□ 2.47
MSH5O43196 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
MSH5O43196 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.45■■■□□ 2.47
MSH5O43196 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.44■■■□□ 2.46
MSH5O43196 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.44■■■□□ 2.46
MSH5O43196 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
MSH5O43196 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
MSH5O43196 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.44■■■□□ 2.46
MSH5O43196 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
MSH5O43196 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
MSH5O43196 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
MSH5O43196 UNC93B3-201ENST00000308076 687 ntBASIC30.43■■■□□ 2.46
MSH5O43196 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
MSH5O43196 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.43■■■□□ 2.46
MSH5O43196 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
MSH5O43196 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
MSH5O43196 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
MSH5O43196 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
MSH5O43196 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.42■■■□□ 2.46
MSH5O43196 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
MSH5O43196 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
MSH5O43196 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
MSH5O43196 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms