Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UPK1AO00322 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
UPK1AO00322 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
UPK1AO00322 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
UPK1AO00322 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.73■■□□□ 1.07
UPK1AO00322 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.73■■□□□ 1.07
UPK1AO00322 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.73■■□□□ 1.07
UPK1AO00322 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
UPK1AO00322 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
UPK1AO00322 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.72■■□□□ 1.07
UPK1AO00322 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.72■■□□□ 1.07
UPK1AO00322 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
UPK1AO00322 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.72■■□□□ 1.07
UPK1AO00322 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.72■■□□□ 1.07
UPK1AO00322 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.72■■□□□ 1.07
UPK1AO00322 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.72■■□□□ 1.07
UPK1AO00322 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.72■■□□□ 1.07
UPK1AO00322 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
UPK1AO00322 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
UPK1AO00322 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
UPK1AO00322 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
UPK1AO00322 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UPK1AO00322 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.71■■□□□ 1.07
UPK1AO00322 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.07
UPK1AO00322 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK1AO00322 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK1AO00322 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
UPK1AO00322 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.7■■□□□ 1.06
UPK1AO00322 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
UPK1AO00322 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.7■■□□□ 1.06
UPK1AO00322 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.7■■□□□ 1.06
UPK1AO00322 AC011551.1-201ENST00000614101 683 ntBASIC21.7■■□□□ 1.06
UPK1AO00322 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK1AO00322 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UPK1AO00322 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.7■■□□□ 1.06
UPK1AO00322 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.7■■□□□ 1.06
UPK1AO00322 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UPK1AO00322 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
UPK1AO00322 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.69■■□□□ 1.06
UPK1AO00322 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
UPK1AO00322 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.69■■□□□ 1.06
UPK1AO00322 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
UPK1AO00322 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
UPK1AO00322 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
UPK1AO00322 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.68■■□□□ 1.06
UPK1AO00322 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
UPK1AO00322 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
UPK1AO00322 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.68■■□□□ 1.06
UPK1AO00322 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.68■■□□□ 1.06
UPK1AO00322 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UPK1AO00322 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPK1AO00322 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK1AO00322 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
UPK1AO00322 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK1AO00322 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.66■■□□□ 1.06
UPK1AO00322 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
UPK1AO00322 AL117328.2-201ENST00000624617 1940 ntBASIC21.66■■□□□ 1.06
UPK1AO00322 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
UPK1AO00322 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPK1AO00322 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
UPK1AO00322 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
UPK1AO00322 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.65■■□□□ 1.06
UPK1AO00322 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
UPK1AO00322 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK1AO00322 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.65■■□□□ 1.06
UPK1AO00322 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.65■■□□□ 1.06
UPK1AO00322 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK1AO00322 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPK1AO00322 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPK1AO00322 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.64■■□□□ 1.06
UPK1AO00322 AC120024.1-201ENST00000562672 995 ntBASIC21.64■■□□□ 1.05
UPK1AO00322 MIR4508-201ENST00000584178 70 ntBASIC21.64■■□□□ 1.05
UPK1AO00322 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 151.1 ms