Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HMGB3O15347 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HMGB3O15347 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
HMGB3O15347 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
HMGB3O15347 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.08□□□□□ -0.47
HMGB3O15347 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HMGB3O15347 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
HMGB3O15347 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HMGB3O15347 SORL1-201ENST00000260197 10904 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 CADM2-201ENST00000383699 9488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
HMGB3O15347 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 AC027612.1-201ENST00000445234 2395 ntBASIC12.08□□□□□ -0.48
HMGB3O15347 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.08□□□□□ -0.48
HMGB3O15347 ITM2B-202ENST00000378565 10137 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SLC7A1-201ENST00000380752 7347 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SCN5A-205ENST00000423572 8362 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 STAG1-203ENST00000434713 5064 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 AC138969.3-201ENST00000546612 1459 ntBASIC12.08□□□□□ -0.48
HMGB3O15347 AC138932.2-201ENST00000548268 1459 ntBASIC12.08□□□□□ -0.48
HMGB3O15347 AC126755.4-201ENST00000549796 1459 ntBASIC12.08□□□□□ -0.48
HMGB3O15347 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.08□□□□□ -0.48
HMGB3O15347 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HMGB3O15347 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 AL356585.2-201ENST00000625078 2396 ntBASIC12.07□□□□□ -0.48
HMGB3O15347 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.07□□□□□ -0.48
HMGB3O15347 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 FREM3-201ENST00000329798 6729 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 ZNF646-201ENST00000300850 6892 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC12.07□□□□□ -0.48
HMGB3O15347 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 FAM197Y8-203ENST00000450145 560 ntBASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 268 ms