Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCSER1Q9C0I3 AC015688.4-201ENST00000580780 1647 ntBASIC16.66■□□□□ 0.26
CCSER1Q9C0I3 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCSER1Q9C0I3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCSER1Q9C0I3 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.65■□□□□ 0.26
CCSER1Q9C0I3 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.64■□□□□ 0.26
CCSER1Q9C0I3 AC015656.1-201ENST00000624209 3578 ntBASIC16.64■□□□□ 0.26
CCSER1Q9C0I3 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.64■□□□□ 0.26
CCSER1Q9C0I3 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC215219.1-201ENST00000400706 1817 ntBASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AP000812.2-201ENST00000538934 718 ntBASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AL162274.1-201ENST00000617191 1098 ntBASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC138951.2-201ENST00000623455 1161 ntBASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCSER1Q9C0I3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms