Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 CETN4P-206ENST00000642099 2168 ntBASIC13.33□□□□□ -0.28
RFT1Q96AA3 UPF3AP3-201ENST00000420996 769 ntBASIC13.33□□□□□ -0.28
RFT1Q96AA3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 TPT1P11-201ENST00000458482 498 ntBASIC13.33□□□□□ -0.28
RFT1Q96AA3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 AC092865.5-201ENST00000545435 363 ntBASIC13.33□□□□□ -0.28
RFT1Q96AA3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 AC130686.1-201ENST00000622936 2466 ntBASIC13.33□□□□□ -0.28
RFT1Q96AA3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFT1Q96AA3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RFT1Q96AA3 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.32□□□□□ -0.28
RFT1Q96AA3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.32□□□□□ -0.28
RFT1Q96AA3 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 SLED1-202ENST00000512051 380 ntBASIC13.32□□□□□ -0.28
RFT1Q96AA3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 MIR6069-201ENST00000620069 79 ntBASIC13.32□□□□□ -0.28
RFT1Q96AA3 LINC00628-201ENST00000628516 1289 ntBASIC13.32□□□□□ -0.28
RFT1Q96AA3 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.32□□□□□ -0.28
RFT1Q96AA3 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFT1Q96AA3 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
RFT1Q96AA3 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RFT1Q96AA3 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFT1Q96AA3 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFT1Q96AA3 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
RFT1Q96AA3 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFT1Q96AA3 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFT1Q96AA3 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RFT1Q96AA3 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms