Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.33□□□□□ -0.44
CDX1P47902 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC12.33□□□□□ -0.44
CDX1P47902 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.33□□□□□ -0.44
CDX1P47902 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.33□□□□□ -0.44
CDX1P47902 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.33□□□□□ -0.44
CDX1P47902 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.33□□□□□ -0.44
CDX1P47902 C18orf15-201ENST00000623680 2534 ntBASIC12.33□□□□□ -0.44
CDX1P47902 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
CDX1P47902 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.32□□□□□ -0.44
CDX1P47902 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
CDX1P47902 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.32□□□□□ -0.44
CDX1P47902 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.32□□□□□ -0.44
CDX1P47902 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.32□□□□□ -0.44
CDX1P47902 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.32□□□□□ -0.44
CDX1P47902 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 MEIS3P1-201ENST00000495167 958 ntBASIC12.32□□□□□ -0.44
CDX1P47902 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.32□□□□□ -0.44
CDX1P47902 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 TPRX2P-201ENST00000535362 881 ntBASIC12.32□□□□□ -0.44
CDX1P47902 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.32□□□□□ -0.44
CDX1P47902 TP53TG3HP-202ENST00000569755 579 ntBASIC12.32□□□□□ -0.44
CDX1P47902 AC140912.1-201ENST00000577171 1054 ntBASIC12.32□□□□□ -0.44
CDX1P47902 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.32□□□□□ -0.44
CDX1P47902 AC025048.6-201ENST00000634326 1161 ntBASIC12.32□□□□□ -0.44
CDX1P47902 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
CDX1P47902 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 AC134407.2-201ENST00000625089 1978 ntBASIC12.32□□□□□ -0.44
CDX1P47902 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CDX1P47902 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.32□□□□□ -0.44
CDX1P47902 SLC7A15P-201ENST00000424028 1363 ntBASIC12.31□□□□□ -0.44
CDX1P47902 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.31□□□□□ -0.44
CDX1P47902 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
CDX1P47902 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
CDX1P47902 AC011474.4-201ENST00000623523 2076 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms