Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.39■□□□□ 0.53
CACNA1FO60840 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.39■□□□□ 0.53
CACNA1FO60840 AC073150.1-201ENST00000450406 1084 ntBASIC18.39■□□□□ 0.53
CACNA1FO60840 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CACNA1FO60840 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CACNA1FO60840 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CACNA1FO60840 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.39■□□□□ 0.53
CACNA1FO60840 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CACNA1FO60840 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18.39■□□□□ 0.53
CACNA1FO60840 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CACNA1FO60840 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC18.39■□□□□ 0.53
CACNA1FO60840 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC18.38■□□□□ 0.53
CACNA1FO60840 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.38■□□□□ 0.53
CACNA1FO60840 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC18.38■□□□□ 0.53
CACNA1FO60840 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC18.38■□□□□ 0.53
CACNA1FO60840 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CACNA1FO60840 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CACNA1FO60840 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CACNA1FO60840 KRT18P9-201ENST00000604826 1300 ntBASIC18.38■□□□□ 0.53
CACNA1FO60840 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.37■□□□□ 0.53
CACNA1FO60840 RN7SL67P-201ENST00000492147 296 ntBASIC18.37■□□□□ 0.53
CACNA1FO60840 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CACNA1FO60840 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
CACNA1FO60840 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.37■□□□□ 0.53
CACNA1FO60840 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 RERG-205ENST00000537647 935 ntTSL 2 BASIC18.37■□□□□ 0.53
CACNA1FO60840 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC18.37■□□□□ 0.53
CACNA1FO60840 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CACNA1FO60840 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.37■□□□□ 0.53
CACNA1FO60840 NAP1L6-202ENST00000641404 1222 ntBASIC18.37■□□□□ 0.53
CACNA1FO60840 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CACNA1FO60840 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms