Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
AP4S1Q9Y587 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 KRT18P2-201ENST00000447938 1258 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 EMBP1-201ENST00000458200 901 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC243562.1-201ENST00000560672 389 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 LINC01225-203ENST00000563550 1244 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC106730.1-201ENST00000566722 1090 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC083964.2-201ENST00000623988 2396 ntBASIC14.19□□□□□ -0.14
AP4S1Q9Y587 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC14.19□□□□□ -0.14
AP4S1Q9Y587 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AC068760.1-201ENST00000493579 1953 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AL139385.1-201ENST00000611744 3272 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AC111170.3-201ENST00000624282 2464 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AC004241.5-201ENST00000623870 2448 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 IGHV3-62-201ENST00000520057 340 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.18□□□□□ -0.14
AP4S1Q9Y587 KRT8P23-201ENST00000560090 1207 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 RARRES2P9-201ENST00000565168 469 ntBASIC14.18□□□□□ -0.14
AP4S1Q9Y587 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms