Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 CSF2RBP1-201ENST00000447905 391 ntBASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 AC232323.1-201ENST00000540724 2099 ntBASIC17.91■□□□□ 0.46
CHMP4CQ96CF2 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 AP005482.1-201ENST00000563722 1273 ntBASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CHMP4CQ96CF2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP4CQ96CF2 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP4CQ96CF2 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms