Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.13■□□□□ 0.01
PTPN4P29074 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
PTPN4P29074 AC007431.3-201ENST00000623221 587 ntBASIC15.13■□□□□ 0.01
PTPN4P29074 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
PTPN4P29074 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 CICP11-201ENST00000434745 2827 ntBASIC15.13■□□□□ 0.01
PTPN4P29074 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PTPN4P29074 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTPN4P29074 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN4P29074 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 AL512384.1-201ENST00000406683 331 ntBASIC15.12■□□□□ 0.01
PTPN4P29074 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 U91328.1-201ENST00000437528 223 ntBASIC15.12■□□□□ 0.01
PTPN4P29074 INE1-201ENST00000456273 945 ntBASIC15.12■□□□□ 0.01
PTPN4P29074 GPR53P-205ENST00000457298 1084 ntBASIC15.12■□□□□ 0.01
PTPN4P29074 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
PTPN4P29074 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.12■□□□□ 0.01
PTPN4P29074 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN4P29074 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.12■□□□□ 0.01
PTPN4P29074 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTPN4P29074 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.12■□□□□ 0.01
PTPN4P29074 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.12■□□□□ 0.01
PTPN4P29074 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 AC018442.1-201ENST00000421439 2061 ntBASIC15.12■□□□□ 0.01
PTPN4P29074 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTPN4P29074 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 PPT1-213ENST00000641319 2388 ntBASIC15.11■□□□□ 0.01
PTPN4P29074 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN4P29074 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.11■□□□□ 0.01
PTPN4P29074 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTPN4P29074 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTPN4P29074 FO393414.2-201ENST00000405153 598 ntBASIC15.11■□□□□ 0.01
PTPN4P29074 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN4P29074 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.11■□□□□ 0.01
PTPN4P29074 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN4P29074 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.11■□□□□ 0.01
PTPN4P29074 AC099568.2-201ENST00000609194 695 ntBASIC15.11■□□□□ 0.01
PTPN4P29074 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
PTPN4P29074 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.11■□□□□ 0.01
PTPN4P29074 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.11■□□□□ 0.01
PTPN4P29074 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PTPN4P29074 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTPN4P29074 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 AL356585.2-201ENST00000625078 2396 ntBASIC15.11■□□□□ 0.01
PTPN4P29074 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTPN4P29074 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 1209.5 ms