Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CHMP1AQ9HD42 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SPDYE7P-202ENST00000420373 878 ntBASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 GHSR-202ENST00000427970 912 ntBASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AC092135.3-201ENST00000624151 1846 ntBASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CHMP1AQ9HD42 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 APP-205ENST00000358918 2366 ntTSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 CICP17-201ENST00000418553 2377 ntBASIC13□□□□□ -0.33
CHMP1AQ9HD42 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CHMP1AQ9HD42 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 STOM-202ENST00000347359 870 ntTSL 2 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.33
CHMP1AQ9HD42 SPDYE14P-201ENST00000442619 822 ntBASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms