Protein–RNA interactions for Protein: Q99453

PHOX2B, Paired mesoderm homeobox protein 2B, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHOX2BQ99453 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.23■□□□□ 0.03
PHOX2BQ99453 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.23■□□□□ 0.03
PHOX2BQ99453 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PHOX2BQ99453 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PHOX2BQ99453 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 AC004522.1-201ENST00000419978 654 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 AL603841.1-201ENST00000430516 664 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 PSMD4P1-201ENST00000433951 1109 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 PUDPP3-201ENST00000445368 636 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 RPL18AP3-201ENST00000462885 528 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 RN7SL396P-201ENST00000471086 295 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 RN7SL67P-201ENST00000492147 296 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 ZNF331-218ENST00000513265 739 ntTSL 3 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 AC105137.3-201ENST00000617588 984 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 AC073911.3-201ENST00000624401 631 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 ME2P1-201ENST00000426028 1970 ntBASIC15.22■□□□□ 0.03
PHOX2BQ99453 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.22■□□□□ 0.03
PHOX2BQ99453 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PHOX2BQ99453 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 NORAD-201ENST00000565493 5339 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 Z69890.1-201ENST00000382990 339 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 KRT17P4-201ENST00000429445 819 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CT45A11P-201ENST00000448043 1134 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC026616.1-201ENST00000523157 525 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 PTPN20CP-201ENST00000614090 920 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 AC010503.4-201ENST00000615487 688 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 NAP1L6-202ENST00000641404 1222 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 AL031430.1-201ENST00000642067 1039 ntBASIC15.21■□□□□ 0.03
PHOX2BQ99453 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PHOX2BQ99453 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.21■□□□□ 0.03
PHOX2BQ99453 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms