Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 ALDH1A2-204ENST00000537372 3700 ntTSL 2 BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SYNE1Q8NF91 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AC016694.1-201ENST00000434179 700 ntBASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 EEF1DP4-201ENST00000446006 880 ntBASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ECM1P1-201ENST00000604092 1279 ntBASIC4.68□□□□□ -1.66
SYNE1Q8NF91 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MIR4722-201ENST00000578292 60 ntBASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 GABBR1-203ENST00000377012 4104 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 REEP1-201ENST00000165698 3857 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AL355864.2-201ENST00000447420 863 ntBASIC4.68□□□□□ -1.66
SYNE1Q8NF91 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 TNS2-210ENST00000549700 4525 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC4.68□□□□□ -1.66
SYNE1Q8NF91 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms