Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPL39P62891 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 AL157414.3-201ENST00000624276 1954 ntBASIC10.66□□□□□ -0.7
RPL39P62891 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPL39P62891 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPL39P62891 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPL39P62891 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC10.66□□□□□ -0.7
RPL39P62891 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC10.65□□□□□ -0.7
RPL39P62891 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 MVK-214ENST00000629016 1591 ntTSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 LBH-204ENST00000406087 559 ntTSL 4 BASIC10.65□□□□□ -0.7
RPL39P62891 SPDYE17-201ENST00000412399 783 ntBASIC10.65□□□□□ -0.7
RPL39P62891 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 HNRNPA1P28-201ENST00000424481 961 ntBASIC10.65□□□□□ -0.7
RPL39P62891 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC10.65□□□□□ -0.7
RPL39P62891 RNA5SP416-201ENST00000516838 111 ntBASIC10.65□□□□□ -0.7
RPL39P62891 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC10.65□□□□□ -0.7
RPL39P62891 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC10.65□□□□□ -0.7
RPL39P62891 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
RPL39P62891 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.7
RPL39P62891 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPL39P62891 KRT8P22-201ENST00000562317 1415 ntBASIC10.65□□□□□ -0.7
RPL39P62891 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
RPL39P62891 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.71
RPL39P62891 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
RPL39P62891 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC10.65□□□□□ -0.71
RPL39P62891 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
RPL39P62891 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.71
RPL39P62891 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.71
RPL39P62891 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC10.65□□□□□ -0.71
RPL39P62891 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC10.65□□□□□ -0.71
RPL39P62891 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC10.65□□□□□ -0.71
RPL39P62891 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.71
RPL39P62891 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC10.65□□□□□ -0.71
RPL39P62891 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
RPL39P62891 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC10.64□□□□□ -0.71
RPL39P62891 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
RPL39P62891 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC10.64□□□□□ -0.71
RPL39P62891 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC10.64□□□□□ -0.71
RPL39P62891 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC10.64□□□□□ -0.71
RPL39P62891 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
RPL39P62891 AGGF1P1-201ENST00000509500 2073 ntBASIC10.64□□□□□ -0.71
RPL39P62891 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms