Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CDH12P55289 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CDH12P55289 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.03□□□□□ -0.16
CDH12P55289 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.03□□□□□ -0.16
CDH12P55289 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.03□□□□□ -0.16
CDH12P55289 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.03□□□□□ -0.16
CDH12P55289 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.03□□□□□ -0.16
CDH12P55289 AL158212.4-201ENST00000624062 1286 ntBASIC14.03□□□□□ -0.16
CDH12P55289 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 AL360270.3-201ENST00000609118 1348 ntBASIC14.03□□□□□ -0.16
CDH12P55289 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CDH12P55289 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.03□□□□□ -0.16
CDH12P55289 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CDH12P55289 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CDH12P55289 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 AC079781.5-202ENST00000641784 3743 ntBASIC14.02□□□□□ -0.16
CDH12P55289 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
CDH12P55289 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.02□□□□□ -0.16
CDH12P55289 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CDH12P55289 BTBD7P1-201ENST00000447253 1453 ntBASIC14.02□□□□□ -0.16
CDH12P55289 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CDH12P55289 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CDH12P55289 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.02□□□□□ -0.16
CDH12P55289 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.02□□□□□ -0.17
CDH12P55289 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.17
CDH12P55289 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.02□□□□□ -0.17
CDH12P55289 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.02□□□□□ -0.17
CDH12P55289 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.02□□□□□ -0.17
CDH12P55289 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
CDH12P55289 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 MEIS3P1-201ENST00000495167 958 ntBASIC14.02□□□□□ -0.17
CDH12P55289 AC022447.6-201ENST00000515522 438 ntBASIC14.02□□□□□ -0.17
CDH12P55289 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.02□□□□□ -0.17
CDH12P55289 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.02□□□□□ -0.17
CDH12P55289 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.02□□□□□ -0.17
CDH12P55289 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.02□□□□□ -0.17
CDH12P55289 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.02□□□□□ -0.17
CDH12P55289 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDH12P55289 AL390754.1-201ENST00000619088 582 ntBASIC14.02□□□□□ -0.17
CDH12P55289 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms