Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.35□□□□□ -0.27
MMP28Q9H239 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 TIMM8BP1-201ENST00000452384 211 ntBASIC13.35□□□□□ -0.27
MMP28Q9H239 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC105233.2-201ENST00000523697 349 ntBASIC13.35□□□□□ -0.27
MMP28Q9H239 AF228730.5-201ENST00000530288 346 ntBASIC13.35□□□□□ -0.27
MMP28Q9H239 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.35□□□□□ -0.27
MMP28Q9H239 AC008267.7-201ENST00000624570 1194 ntBASIC13.35□□□□□ -0.27
MMP28Q9H239 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
MMP28Q9H239 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
MMP28Q9H239 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.35□□□□□ -0.27
MMP28Q9H239 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AC015818.8-201ENST00000587907 1519 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
MMP28Q9H239 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
MMP28Q9H239 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 CYMP-203ENST00000474680 1263 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.34□□□□□ -0.27
MMP28Q9H239 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 IGHV3-62-201ENST00000520057 340 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 RFPL4AP1-201ENST00000530883 850 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.34□□□□□ -0.27
MMP28Q9H239 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.34□□□□□ -0.27
MMP28Q9H239 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AC027307.2-201ENST00000591252 911 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 MIR4321-201ENST00000592276 80 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 AC073389.1-201ENST00000595595 795 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.34□□□□□ -0.27
MMP28Q9H239 AP000845.1-201ENST00000581677 2131 ntBASIC13.34□□□□□ -0.27
MMP28Q9H239 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
MMP28Q9H239 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.34□□□□□ -0.27
MMP28Q9H239 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms