Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
CX3CL1P78423 AC010327.5-201ENST00000586923 3061 ntBASIC12.16□□□□□ -0.46
CX3CL1P78423 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 CRB3P1-201ENST00000449338 276 ntBASIC12.16□□□□□ -0.46
CX3CL1P78423 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.16□□□□□ -0.46
CX3CL1P78423 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.16□□□□□ -0.46
CX3CL1P78423 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 CTBP2P3-201ENST00000585629 1255 ntBASIC12.16□□□□□ -0.46
CX3CL1P78423 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.16□□□□□ -0.46
CX3CL1P78423 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
CX3CL1P78423 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.16□□□□□ -0.46
CX3CL1P78423 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CX3CL1P78423 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.16□□□□□ -0.46
CX3CL1P78423 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 AC093525.8-201ENST00000624099 1342 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.15□□□□□ -0.46
CX3CL1P78423 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.15□□□□□ -0.46
CX3CL1P78423 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.15□□□□□ -0.46
CX3CL1P78423 KRT8P22-201ENST00000562317 1415 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
CX3CL1P78423 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.15□□□□□ -0.46
CX3CL1P78423 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.15□□□□□ -0.46
CX3CL1P78423 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.15□□□□□ -0.46
CX3CL1P78423 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.15□□□□□ -0.46
CX3CL1P78423 AC124283.3-201ENST00000570869 594 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 BX539320.1-201ENST00000623759 877 ntBASIC12.15□□□□□ -0.46
CX3CL1P78423 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.15□□□□□ -0.46
CX3CL1P78423 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.15□□□□□ -0.46
CX3CL1P78423 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CX3CL1P78423 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms