Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.86□□□□□ -0.35
SDCBPO00560 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 KRT18P28-201ENST00000453838 1332 ntBASIC12.86□□□□□ -0.35
SDCBPO00560 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SDCBPO00560 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.86□□□□□ -0.35
SDCBPO00560 AC092135.3-201ENST00000624151 1846 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
SDCBPO00560 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 AL133267.1-201ENST00000398220 340 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 MIR943-201ENST00000401286 94 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 KRT18P64-201ENST00000434946 1219 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
SDCBPO00560 AF228730.6-201ENST00000641497 218 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 AC084121.3-201ENST00000641716 218 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.85□□□□□ -0.35
SDCBPO00560 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 AC087499.5-201ENST00000452760 1342 ntBASIC12.85□□□□□ -0.35
SDCBPO00560 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SDCBPO00560 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.85□□□□□ -0.35
SDCBPO00560 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
SDCBPO00560 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SDCBPO00560 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.84□□□□□ -0.35
SDCBPO00560 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.84□□□□□ -0.35
SDCBPO00560 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms