Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.49□□□□□ -0.25
SCN1BQ07699 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
SCN1BQ07699 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.49□□□□□ -0.25
SCN1BQ07699 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.49□□□□□ -0.25
SCN1BQ07699 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.48□□□□□ -0.25
SCN1BQ07699 AL136982.4-201ENST00000437689 1740 ntBASIC13.48□□□□□ -0.25
SCN1BQ07699 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 AC118758.2-201ENST00000614242 2813 ntBASIC13.48□□□□□ -0.25
SCN1BQ07699 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ALG1L5P-201ENST00000482043 771 ntBASIC13.48□□□□□ -0.25
SCN1BQ07699 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 PGAM5P1-201ENST00000518923 814 ntBASIC13.48□□□□□ -0.25
SCN1BQ07699 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.48□□□□□ -0.25
SCN1BQ07699 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.48□□□□□ -0.25
SCN1BQ07699 SLC25A39P2-201ENST00000537614 270 ntBASIC13.48□□□□□ -0.25
SCN1BQ07699 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.48□□□□□ -0.25
SCN1BQ07699 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SCN1BQ07699 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SCN1BQ07699 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SCN1BQ07699 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.47□□□□□ -0.25
SCN1BQ07699 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
SCN1BQ07699 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 FAM220BP-201ENST00000377689 816 ntBASIC13.47□□□□□ -0.25
SCN1BQ07699 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
SCN1BQ07699 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 ADH5P3-201ENST00000433842 1137 ntBASIC13.47□□□□□ -0.25
SCN1BQ07699 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.47□□□□□ -0.25
SCN1BQ07699 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 KRT8P23-201ENST00000560090 1207 ntBASIC13.47□□□□□ -0.25
SCN1BQ07699 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.47□□□□□ -0.25
SCN1BQ07699 AC005829.1-201ENST00000570002 483 ntBASIC13.47□□□□□ -0.25
SCN1BQ07699 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms