Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.64■□□□□ 0.41
MRE11P49959 MIR4525-201ENST00000580000 75 ntBASIC17.64■□□□□ 0.41
MRE11P49959 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
MRE11P49959 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.64■□□□□ 0.41
MRE11P49959 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.64■□□□□ 0.41
MRE11P49959 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC17.64■□□□□ 0.41
MRE11P49959 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC17.64■□□□□ 0.41
MRE11P49959 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
MRE11P49959 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
MRE11P49959 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
MRE11P49959 AC019294.4-201ENST00000561777 2905 ntBASIC17.64■□□□□ 0.41
MRE11P49959 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MRE11P49959 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
MRE11P49959 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.63■□□□□ 0.41
MRE11P49959 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 AC107890.1-201ENST00000422478 521 ntBASIC17.63■□□□□ 0.41
MRE11P49959 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
MRE11P49959 IGHV3-42-201ENST00000520410 361 ntBASIC17.63■□□□□ 0.41
MRE11P49959 FAM8A2P-201ENST00000528813 1142 ntBASIC17.63■□□□□ 0.41
MRE11P49959 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.63■□□□□ 0.41
MRE11P49959 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.63■□□□□ 0.41
MRE11P49959 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MRE11P49959 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 AC025580.3-201ENST00000617932 1424 ntBASIC17.63■□□□□ 0.41
MRE11P49959 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MRE11P49959 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 MIR1909-201ENST00000411312 80 ntBASIC17.62■□□□□ 0.41
MRE11P49959 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 GHSR-202ENST00000427970 912 ntBASIC17.62■□□□□ 0.41
MRE11P49959 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.62■□□□□ 0.41
MRE11P49959 MIR4515-201ENST00000584082 81 ntBASIC17.62■□□□□ 0.41
MRE11P49959 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.62■□□□□ 0.41
MRE11P49959 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.62■□□□□ 0.41
MRE11P49959 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MRE11P49959 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms