Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC17.9■□□□□ 0.46
COL4A1P02462 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC17.9■□□□□ 0.46
COL4A1P02462 AC103810.10-201ENST00000606504 343 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL4A1P02462 AC009560.1-201ENST00000620208 434 ntBASIC17.9■□□□□ 0.46
COL4A1P02462 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL4A1P02462 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.46
COL4A1P02462 AC092384.3-202ENST00000564646 2873 ntBASIC17.89■□□□□ 0.46
COL4A1P02462 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL4A1P02462 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
COL4A1P02462 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
COL4A1P02462 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.89■□□□□ 0.46
COL4A1P02462 TCAF2P1-201ENST00000291129 2421 ntBASIC17.89■□□□□ 0.46
COL4A1P02462 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 BRD7P5-201ENST00000299197 1822 ntBASIC17.89■□□□□ 0.45
COL4A1P02462 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
COL4A1P02462 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
COL4A1P02462 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 AC095040.1-201ENST00000513286 675 ntBASIC17.89■□□□□ 0.45
COL4A1P02462 MIR6858-201ENST00000620733 67 ntBASIC17.89■□□□□ 0.45
COL4A1P02462 AC127024.7-201ENST00000625101 200 ntBASIC17.89■□□□□ 0.45
COL4A1P02462 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.89■□□□□ 0.45
COL4A1P02462 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL4A1P02462 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL4A1P02462 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.89■□□□□ 0.45
COL4A1P02462 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 AC022532.1-201ENST00000624563 1728 ntBASIC17.89■□□□□ 0.45
COL4A1P02462 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL4A1P02462 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A1P02462 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL4A1P02462 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL4A1P02462 MIR645-201ENST00000385283 94 ntBASIC17.88■□□□□ 0.45
COL4A1P02462 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 AC114501.1-201ENST00000445949 172 ntBASIC17.88■□□□□ 0.45
COL4A1P02462 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A1P02462 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 RN7SL81P-201ENST00000493781 261 ntBASIC17.88■□□□□ 0.45
COL4A1P02462 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC17.88■□□□□ 0.45
COL4A1P02462 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL4A1P02462 AL354702.1-201ENST00000442006 1960 ntBASIC17.88■□□□□ 0.45
COL4A1P02462 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL4A1P02462 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.88■□□□□ 0.45
COL4A1P02462 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
COL4A1P02462 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms