Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FAM90A12P-201ENST00000519497 2375 ntBASIC11.38□□□□□ -0.59
HLA-DQA1P01909 FAM90A24P-201ENST00000520792 2369 ntBASIC11.38□□□□□ -0.59
HLA-DQA1P01909 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DQA1P01909 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DQA1P01909 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DQA1P01909 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DQA1P01909 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC006504.4-201ENST00000592118 1568 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 OS9-206ENST00000435406 2346 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 MEX3B-202ENST00000558133 4333 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 HMGA1P7-201ENST00000406908 502 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC092910.1-201ENST00000482027 1129 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC136632.2-201ENST00000512891 861 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 RPS29-206ENST00000557111 488 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC005593.1-201ENST00000624894 515 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 AC092053.3-201ENST00000641308 4975 ntBASIC11.37□□□□□ -0.59
HLA-DQA1P01909 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DQA1P01909 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 MIR497HG-202ENST00000572453 3838 ntBASIC11.36□□□□□ -0.59
HLA-DQA1P01909 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 AC024267.1-201ENST00000582320 895 ntBASIC11.36□□□□□ -0.59
HLA-DQA1P01909 CALM3-211ENST00000598871 561 ntTSL 4 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 AL078644.1-201ENST00000609881 752 ntBASIC11.36□□□□□ -0.59
HLA-DQA1P01909 AC008735.5-201ENST00000623544 497 ntBASIC11.36□□□□□ -0.59
HLA-DQA1P01909 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms