Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 AC015936.2-201ENST00000593177 259 ntBASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
ATG4BQ9Y4P1 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 GK-202ENST00000378941 458 ntTSL 3 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 AC005229.1-201ENST00000392885 409 ntBASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 U91328.1-201ENST00000437528 223 ntBASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 AL138709.1-201ENST00000614840 1693 ntBASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 INTS4P1-203ENST00000641008 3683 ntBASIC14.25□□□□□ -0.13
ATG4BQ9Y4P1 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AC232323.1-201ENST00000540724 2099 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AL355864.2-201ENST00000447420 863 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 BCRP2-202ENST00000447763 634 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 FO681548.1-201ENST00000455617 1132 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 BCRP6-201ENST00000510112 632 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 BCRP7-201ENST00000511549 544 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 GNRHR2-203ENST00000581100 1187 ntBASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms