Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 LINC00528-201ENST00000600723 2160 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 MIR1908-201ENST00000410394 80 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 RNA5SP423-201ENST00000517127 109 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC008738.7-201ENST00000609744 511 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC007191.1-201ENST00000623179 2995 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
PDLIM3Q53GG5 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 BRWD1P1-201ENST00000401091 371 ntBASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.59□□□□□ -0.39
PDLIM3Q53GG5 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms