Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.78□□□□□ -0.04
SHMT2P34897 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SHMT2P34897 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
SHMT2P34897 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SHMT2P34897 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SHMT2P34897 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
SHMT2P34897 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.77□□□□□ -0.04
SHMT2P34897 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
SHMT2P34897 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.77□□□□□ -0.04
SHMT2P34897 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SHMT2P34897 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.77□□□□□ -0.04
SHMT2P34897 OR8S1-201ENST00000310194 1080 ntBASIC14.77□□□□□ -0.05
SHMT2P34897 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 GK-202ENST00000378941 458 ntTSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
SHMT2P34897 AC092933.1-201ENST00000393644 945 ntBASIC14.77□□□□□ -0.05
SHMT2P34897 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 AC112492.5-201ENST00000421897 457 ntBASIC14.77□□□□□ -0.05
SHMT2P34897 AC022616.1-201ENST00000518688 554 ntBASIC14.77□□□□□ -0.05
SHMT2P34897 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.77□□□□□ -0.05
SHMT2P34897 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.77□□□□□ -0.05
SHMT2P34897 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
SHMT2P34897 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SHMT2P34897 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
SHMT2P34897 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SHMT2P34897 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.76□□□□□ -0.05
SHMT2P34897 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SHMT2P34897 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.76□□□□□ -0.05
SHMT2P34897 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.76□□□□□ -0.05
SHMT2P34897 AC079776.1-201ENST00000401540 1152 ntBASIC14.76□□□□□ -0.05
SHMT2P34897 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms