Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 AL360270.3-201ENST00000609118 1348 ntBASIC14.86□□□□□ -0.03
PKNOX1P55347 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.86□□□□□ -0.03
PKNOX1P55347 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
PKNOX1P55347 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PKNOX1P55347 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.85□□□□□ -0.03
PKNOX1P55347 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 BTBD7P1-201ENST00000447253 1453 ntBASIC14.85□□□□□ -0.03
PKNOX1P55347 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.85□□□□□ -0.03
PKNOX1P55347 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
PKNOX1P55347 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.85□□□□□ -0.03
PKNOX1P55347 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.85□□□□□ -0.03
PKNOX1P55347 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
PKNOX1P55347 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.85□□□□□ -0.03
PKNOX1P55347 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.85□□□□□ -0.03
PKNOX1P55347 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.85□□□□□ -0.03
PKNOX1P55347 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PKNOX1P55347 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PKNOX1P55347 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PKNOX1P55347 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
PKNOX1P55347 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 AC100757.3-201ENST00000622361 1406 ntBASIC14.84□□□□□ -0.03
PKNOX1P55347 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PKNOX1P55347 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
PKNOX1P55347 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.84□□□□□ -0.03
PKNOX1P55347 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.84□□□□□ -0.03
PKNOX1P55347 MEIS3P1-201ENST00000495167 958 ntBASIC14.84□□□□□ -0.03
PKNOX1P55347 AC097493.3-201ENST00000509725 367 ntBASIC14.84□□□□□ -0.03
PKNOX1P55347 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
PKNOX1P55347 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.84□□□□□ -0.03
PKNOX1P55347 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PKNOX1P55347 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 AL590560.3-201ENST00000623350 461 ntBASIC14.84□□□□□ -0.03
PKNOX1P55347 AL158212.4-201ENST00000624062 1286 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms