Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NUDCD3Q8IVD9 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.06■□□□□ 0
NUDCD3Q8IVD9 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 AL354702.1-201ENST00000442006 1960 ntBASIC15.05■□□□□ 0
NUDCD3Q8IVD9 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NUDCD3Q8IVD9 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 RBPMS2P1-201ENST00000437762 623 ntBASIC15.05■□□□□ -0
NUDCD3Q8IVD9 RPL13P2-201ENST00000440687 659 ntBASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AL360270.3-201ENST00000609118 1348 ntBASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC018665.1-201ENST00000622927 1362 ntBASIC15.05■□□□□ -0
NUDCD3Q8IVD9 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.05■□□□□ -0
NUDCD3Q8IVD9 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 TOMM22P5-201ENST00000416399 439 ntBASIC15.04■□□□□ -0
NUDCD3Q8IVD9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 SERBP1P3-201ENST00000459980 809 ntBASIC15.04■□□□□ -0
NUDCD3Q8IVD9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 AC022447.6-201ENST00000515522 438 ntBASIC15.04■□□□□ -0
NUDCD3Q8IVD9 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 AL589739.1-201ENST00000607720 493 ntBASIC15.04■□□□□ -0
NUDCD3Q8IVD9 AL033527.5-202ENST00000641632 1098 ntBASIC15.04■□□□□ -0
NUDCD3Q8IVD9 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NUDCD3Q8IVD9 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms