Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC120045.2-201ENST00000567334 178 ntBASIC14.7□□□□□ -0.06
HNF4AP41235 TP53TG3HP-202ENST00000569755 579 ntBASIC14.7□□□□□ -0.06
HNF4AP41235 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.7□□□□□ -0.06
HNF4AP41235 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.7□□□□□ -0.06
HNF4AP41235 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HNF4AP41235 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 CICP14-201ENST00000629111 2732 ntBASIC14.69□□□□□ -0.06
HNF4AP41235 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.69□□□□□ -0.06
HNF4AP41235 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.69□□□□□ -0.06
HNF4AP41235 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.69□□□□□ -0.06
HNF4AP41235 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 AC133539.2-201ENST00000604757 467 ntBASIC14.69□□□□□ -0.06
HNF4AP41235 TMEM261P1-201ENST00000604899 340 ntBASIC14.69□□□□□ -0.06
HNF4AP41235 BX539320.1-201ENST00000623759 877 ntBASIC14.69□□□□□ -0.06
HNF4AP41235 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HNF4AP41235 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HNF4AP41235 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.68□□□□□ -0.06
HNF4AP41235 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 AL157414.3-201ENST00000624276 1954 ntBASIC14.68□□□□□ -0.06
HNF4AP41235 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HNF4AP41235 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.68□□□□□ -0.06
HNF4AP41235 AP001582.1-201ENST00000525856 295 ntBASIC14.68□□□□□ -0.06
HNF4AP41235 SPDYE22P-201ENST00000582158 798 ntBASIC14.68□□□□□ -0.06
HNF4AP41235 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HNF4AP41235 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms