Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 RPL37AP1-201ENST00000412502 279 ntBASIC15.74■□□□□ 0.11
CCDC188H7C350 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC188H7C350 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.74■□□□□ 0.11
CCDC188H7C350 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC188H7C350 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC188H7C350 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC188H7C350 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC188H7C350 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.74■□□□□ 0.11
CCDC188H7C350 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC188H7C350 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC188H7C350 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC188H7C350 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.73■□□□□ 0.11
CCDC188H7C350 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC188H7C350 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC188H7C350 TMEM198B-204ENST00000484016 896 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.73■□□□□ 0.11
CCDC188H7C350 AP000344.2-201ENST00000512987 629 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 AC005829.1-201ENST00000570002 483 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC188H7C350 AP001059.3-201ENST00000619053 235 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 AC089987.1-201ENST00000551654 2209 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 AL137783.1-201ENST00000623494 1896 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 TCAM1P-207ENST00000485295 1537 ntBASIC15.73■□□□□ 0.11
CCDC188H7C350 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC188H7C350 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CCDC188H7C350 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC188H7C350 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC188H7C350 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC188H7C350 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC188H7C350 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC188H7C350 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CCDC188H7C350 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CCDC188H7C350 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC188H7C350 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC188H7C350 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms