Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.81■□□□□ 0.6
TMEM56-RWDD3S4R434 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TMEM56-RWDD3S4R434 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TMEM56-RWDD3S4R434 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TMEM56-RWDD3S4R434 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 AC016575.1-201ENST00000607026 382 ntBASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TMEM56-RWDD3S4R434 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 EP400NL-214ENST00000641289 2402 ntBASIC18.79■□□□□ 0.6
TMEM56-RWDD3S4R434 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TMEM56-RWDD3S4R434 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TMEM56-RWDD3S4R434 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TMEM56-RWDD3S4R434 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.77■□□□□ 0.6
TMEM56-RWDD3S4R434 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TMEM56-RWDD3S4R434 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TMEM56-RWDD3S4R434 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
TMEM56-RWDD3S4R434 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
TMEM56-RWDD3S4R434 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 AL161729.1-201ENST00000604104 1402 ntBASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.76■□□□□ 0.59
TMEM56-RWDD3S4R434 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 C1orf229-201ENST00000623686 2258 ntBASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TMEM56-RWDD3S4R434 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 LINC00565-201ENST00000562710 2331 ntBASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TMEM56-RWDD3S4R434 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms