Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.3■□□□□ 0.682e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.682e-6■■■■□ 21.7
U2AF1Q01081 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.622e-6■■■■□ 21.7
U2AF1Q01081 PAEP-203ENST00000371768 838 ntTSL 518.83■□□□□ 0.62e-6■■■■□ 21.7
U2AF1Q01081 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.79■□□□□ 0.66e-9■■■■□ 21.7
U2AF1Q01081 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.76■□□□□ 0.596e-9■■■■□ 21.7
U2AF1Q01081 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.582e-6■■■■□ 21.7
U2AF1Q01081 TPM1-230ENST00000561266 671 ntTSL 318.65■□□□□ 0.586e-9■■■■□ 21.7
U2AF1Q01081 PAEP-205ENST00000433563 826 ntTSL 318.42■□□□□ 0.542e-6■■■■□ 21.7
U2AF1Q01081 TMEM91-207ENST00000535712 400 ntTSL 218.14■□□□□ 0.492e-6■■■■□ 21.7
U2AF1Q01081 TMEM91-212ENST00000546050 378 ntTSL 318.14■□□□□ 0.492e-6■■■■□ 21.7
U2AF1Q01081 SS18-204ENST00000539244 977 ntTSL 1 (best)18.13■□□□□ 0.492e-6■■■■□ 21.7
U2AF1Q01081 SS18-222ENST00000582792 531 ntTSL 518.1■□□□□ 0.492e-6■■■■□ 21.7
U2AF1Q01081 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.462e-6■■■■□ 21.7
U2AF1Q01081 ACCS-213ENST00000534035 532 ntTSL 317.84■□□□□ 0.452e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-220ENST00000621272 489 ntTSL 517.65■□□□□ 0.422e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-224ENST00000582733 521 ntTSL 417.63■□□□□ 0.412e-6■■■■□ 21.7
U2AF1Q01081 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.396e-9■■■■□ 21.7
U2AF1Q01081 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.372e-6■■■■□ 21.7
U2AF1Q01081 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.372e-6■■■■□ 21.7
U2AF1Q01081 SS18-202ENST00000269138 1548 ntTSL 217.09■□□□□ 0.332e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.322e-6■■■■□ 21.7
U2AF1Q01081 SS18-219ENST00000581570 571 ntTSL 516.98■□□□□ 0.312e-6■■■■□ 21.7
U2AF1Q01081 TMEM91-206ENST00000447302 721 ntTSL 2 BASIC16.96■□□□□ 0.312e-6■■■■□ 21.7
U2AF1Q01081 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.32e-6■■■■□ 21.7
U2AF1Q01081 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.242e-6■■■■□ 21.7
U2AF1Q01081 SS18-225ENST00000585121 1545 ntTSL 216.55■□□□□ 0.242e-6■■■■□ 21.7
U2AF1Q01081 POLR3E-208ENST00000564061 4800 ntTSL 1 (best)16.16■□□□□ 0.182e-6■■■■□ 21.7
U2AF1Q01081 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.152e-6■■■■□ 21.7
U2AF1Q01081 AC011462.1-201ENST00000604424 567 ntTSL 415.66■□□□□ 0.12e-6■■■■□ 21.7
U2AF1Q01081 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC15.62■□□□□ 0.092e-6■■■■□ 21.7
U2AF1Q01081 TMEM138-203ENST00000423772 2068 ntTSL 315.36■□□□□ 0.059e-12■■■■□ 21.7
U2AF1Q01081 ACCS-201ENST00000263776 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.052e-6■■■■□ 21.7
U2AF1Q01081 TMEM91-214ENST00000604123 757 ntTSL 3 BASIC15.3■□□□□ 0.042e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-207ENST00000512465 4663 ntTSL 1 (best)15.18■□□□□ 0.022e-6■■■■□ 21.7
U2AF1Q01081 TMEM91-204ENST00000413014 650 ntTSL 2 BASIC15.12■□□□□ 0.012e-6■■■■□ 21.7
U2AF1Q01081 PAEP-209ENST00000611414 729 ntTSL 5 BASIC14.91□□□□□ -0.022e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-202ENST00000382839 4710 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.032e-6■■■■□ 21.7
U2AF1Q01081 ACCS-207ENST00000531190 639 ntTSL 314.77□□□□□ -0.052e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-219ENST00000584108 1595 ntTSL 514.52□□□□□ -0.082e-6■■■■□ 21.7
U2AF1Q01081 NDST2-207ENST00000639645 2448 ntTSL 5 BASIC14.47□□□□□ -0.092e-6■■■■□ 21.7
U2AF1Q01081 ACCS-205ENST00000527557 397 ntTSL 314.34□□□□□ -0.112e-6■■■■□ 21.7
U2AF1Q01081 PAEP-202ENST00000371766 851 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.112e-6■■■■□ 21.7
U2AF1Q01081 SS18-213ENST00000579640 1840 ntTSL 214.29□□□□□ -0.122e-6■■■■□ 21.7
U2AF1Q01081 TPM1-229ENST00000561242 673 ntTSL 214.27□□□□□ -0.136e-9■■■■□ 21.7
U2AF1Q01081 TPM1-227ENST00000560970 1039 ntTSL 1 (best)14.24□□□□□ -0.136e-9■■■■□ 21.7
U2AF1Q01081 AC005154.1-217ENST00000584199 581 ntTSL 4 BASIC14.21□□□□□ -0.132e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-208ENST00000513350 3727 ntAPPRIS ALT2 TSL 214□□□□□ -0.172e-6■■■■□ 21.7
U2AF1Q01081 NDST2-201ENST00000299641 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.172e-6■■■■□ 21.7
U2AF1Q01081 TPM1-221ENST00000559831 573 ntTSL 513.91□□□□□ -0.186e-9■■■■□ 21.7
U2AF1Q01081 TPM1-210ENST00000558264 2687 ntTSL 213.86□□□□□ -0.196e-9■■■■□ 21.7
U2AF1Q01081 AC005154.1-223ENST00000584372 547 ntTSL 5 BASIC13.75□□□□□ -0.212e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-208ENST00000523203 775 ntTSL 513.66□□□□□ -0.222e-6■■■■□ 21.7
U2AF1Q01081 AL390961.1-202ENST00000636744 1172 ntBASIC13.63□□□□□ -0.232e-6■■■■□ 21.7
U2AF1Q01081 TPM1-212ENST00000558347 1525 ntTSL 513.6□□□□□ -0.236e-9■■■■□ 21.7
U2AF1Q01081 TMEM91-213ENST00000546362 489 ntTSL 313.51□□□□□ -0.252e-6■■■■□ 21.7
U2AF1Q01081 SS18-221ENST00000582448 585 ntTSL 513.22□□□□□ -0.292e-6■■■■□ 21.7
U2AF1Q01081 SS18-207ENST00000577636 580 ntTSL 313.22□□□□□ -0.292e-6■■■■□ 21.7
U2AF1Q01081 SS18-210ENST00000578700 575 ntTSL 513.22□□□□□ -0.292e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-218ENST00000614950 418 ntTSL 513.14□□□□□ -0.312e-6■■■■□ 21.7
U2AF1Q01081 AARS2-201ENST00000244571 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.342e-6■■■■□ 21.7
U2AF1Q01081 SS18-205ENST00000542420 2321 ntTSL 2 BASIC12.77□□□□□ -0.362e-6■■■■□ 21.7
U2AF1Q01081 SS18-203ENST00000415083 3414 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.382e-6■■■■□ 21.7
U2AF1Q01081 ACAP2-215ENST00000618471 3207 ntTSL 5 BASIC12.6□□□□□ -0.392e-6■■■■□ 21.7
U2AF1Q01081 NDST2-202ENST00000309979 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.42e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-206ENST00000515748 620 ntTSL 2 BASIC12.44□□□□□ -0.422e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-221ENST00000581794 2795 ntTSL 212.31□□□□□ -0.442e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-215ENST00000584621 2437 ntTSL 1 (best) BASIC12.25□□□□□ -0.452e-6■■■■□ 21.7
U2AF1Q01081 ACCS-210ENST00000532122 527 ntTSL 312.08□□□□□ -0.482e-6■■■■□ 21.7
U2AF1Q01081 TMEM138-202ENST00000381787 1205 ntTSL 2 BASIC11.99□□□□□ -0.499e-12■■■■□ 21.7
U2AF1Q01081 PAEP-204ENST00000418284 465 ntTSL 311.93□□□□□ -0.52e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-210ENST00000545951 3987 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.522e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-212ENST00000578245 1887 ntTSL 211.61□□□□□ -0.552e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-209ENST00000513898 4202 ntTSL 1 (best)11.52□□□□□ -0.562e-6■■■■□ 21.7
U2AF1Q01081 ACCS-204ENST00000527346 3373 ntTSL 211.32□□□□□ -0.62e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-203ENST00000502458 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.642e-6■■■■□ 21.7
U2AF1Q01081 FAM193A-204ENST00000505311 4110 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.662e-6■■■■□ 21.7
U2AF1Q01081 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC10.39□□□□□ -0.752e-6■■■■□ 21.7
U2AF1Q01081 ACAP2-206ENST00000450200 684 ntTSL 510.38□□□□□ -0.752e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC10.36□□□□□ -0.752e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-216ENST00000582145 1101 ntTSL 5 BASIC10.3□□□□□ -0.762e-6■■■■□ 21.7
U2AF1Q01081 PAEP-206ENST00000454923 629 ntTSL 310.13□□□□□ -0.792e-6■■■■□ 21.7
U2AF1Q01081 TPM1-231ENST00000561395 673 ntTSL 59.91□□□□□ -0.826e-9■■■■□ 21.7
U2AF1Q01081 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.822e-6■■■■□ 21.7
U2AF1Q01081 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.862e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-210ENST00000426529 4034 ntTSL 59.65□□□□□ -0.872e-6■■■■□ 21.7
U2AF1Q01081 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.952e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC8.91□□□□□ -0.982e-6■■■■□ 21.7
U2AF1Q01081 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC8.82□□□□□ -12e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC8.67□□□□□ -1.022e-6■■■■□ 21.7
U2AF1Q01081 AHI1-206ENST00000475846 2920 ntTSL 28.47□□□□□ -1.052e-6■■■■□ 21.7
U2AF1Q01081 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.082e-6■■■■□ 21.7
U2AF1Q01081 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.74□□□□□ -1.172e-6■■■■□ 21.7
U2AF1Q01081 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.64□□□□□ -1.192e-6■■■■□ 21.7
U2AF1Q01081 TMEM138-207ENST00000539776 1635 ntTSL 26.81□□□□□ -1.329e-12■■■■□ 21.7
U2AF1Q01081 TMEM138-212ENST00000545420 555 ntTSL 36.78□□□□□ -1.329e-12■■■■□ 21.7
U2AF1Q01081 POLR3E-206ENST00000563282 448 ntTSL 26.68□□□□□ -1.342e-6■■■■□ 21.7
U2AF1Q01081 FLJ46284-204ENST00000623616 4282 nt6.24□□□□□ -1.412e-6■■■■□ 21.7
U2AF1Q01081 SS18-223ENST00000583595 375 ntTSL 36.16□□□□□ -1.422e-6■■■■□ 21.7
U2AF1Q01081 AHI1-207ENST00000487135 421 ntTSL 25.2□□□□□ -1.582e-6■■■■□ 21.7
Retrieved 100 of 10,096 protein–RNA pairs in 55.7 ms