RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.94	■■□□□ 1.26
SS18-223	ENST00000583595	CHIC1	Q5VXU3	224 aa		22.12	■■□□□ 1.13
SS18-223	ENST00000583595	SENP3	Q9H4L4	574 aa	Predicted RBP	19.51	■□□□□ 0.71
SS18-223	ENST00000583595	PHF23	Q9BUL5	403 aa	Predicted RBP	19.43	■□□□□ 0.7
SS18-223	ENST00000583595	FOXD1	Q16676	465 aa		18.15	■□□□□ 0.5
SS18-223	ENST00000583595	PLPPR3	Q6T4P5	718 aa		17.83	■□□□□ 0.44
SS18-223	ENST00000583595	PPP6R1	Q9UPN7	881 aa		17.25	■□□□□ 0.35
SS18-223	ENST00000583595	ADRA2B	P18089	450 aa		17.23	■□□□□ 0.35
SS18-223	ENST00000583595	POTED	Q86YR6	584 aa		17.06	■□□□□ 0.32
SS18-223	ENST00000583595	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.04	■□□□□ 0.32
SS18-223	ENST00000583595	MSH5	O43196	834 aa		16.84	■□□□□ 0.29
SS18-223	ENST00000583595	SCAF1	Q9H7N4	1312 aa	Known RBP	15.74	■□□□□ 0.11
SS18-223	ENST00000583595	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.72	■□□□□ 0.11
SS18-223	ENST00000583595	PPP4R3CP	Q6ZMV5	832 aa		15.69	■□□□□ 0.1
SS18-223	ENST00000583595	DMRT2	Q9Y5R5	561 aa		15.53	■□□□□ 0.08
SS18-223	ENST00000583595	CNKSR2	Q8WXI2	1034 aa		15.3	■□□□□ 0.04
SS18-223	ENST00000583595	NCBP3	Q53F19	620 aa	Known RBP	15.19	■□□□□ 0.02
SS18-223	ENST00000583595	HOXD11	P31277	338 aa	Predicted RBP	15.09	■□□□□ 0.01
SS18-223	ENST00000583595	RNF216	Q9NWF9	866 aa	Predicted RBP	15.07	■□□□□ 0
SS18-223	ENST00000583595	KCNA4	P22459	653 aa		15.01	□□□□□ -0.01
SS18-223	ENST00000583595	NPM3	O75607	178 aa	Known RBP	14.97	□□□□□ -0.01
SS18-223	ENST00000583595	DCAF8L1	A6NGE4	600 aa		14.91	□□□□□ -0.02
SS18-223	ENST00000583595	DNAJC5B	Q9UF47	199 aa		14.53	□□□□□ -0.08
SS18-223	ENST00000583595	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.41	□□□□□ -0.1
SS18-223	ENST00000583595	RNF39	Q9H2S5	420 aa		14.4	□□□□□ -0.1
SS18-223	ENST00000583595	CACNB1	Q02641	598 aa	Predicted RBP	14.26	□□□□□ -0.13
SS18-223	ENST00000583595	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.23	□□□□□ -0.13
SS18-223	ENST00000583595	C1QBP	Q07021	282 aa	Known RBP	14.22	□□□□□ -0.13
SS18-223	ENST00000583595	SLC4A2	P04920	1241 aa		14.21	□□□□□ -0.13
SS18-223	ENST00000583595		U3KPZ7	1027 aa	Predicted RBP	14.12	□□□□□ -0.15
SS18-223	ENST00000583595	FOXD4L1	Q9NU39	408 aa		13.88	□□□□□ -0.19
SS18-223	ENST00000583595	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.84	□□□□□ -0.19
SS18-223	ENST00000583595	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.84	□□□□□ -0.19
SS18-223	ENST00000583595	MYCN	P04198	464 aa	Predicted RBP	13.83	□□□□□ -0.2
SS18-223	ENST00000583595	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.83	□□□□□ -0.2
SS18-223	ENST00000583595	ZBTB22	O15209	634 aa		13.79	□□□□□ -0.2
SS18-223	ENST00000583595	CAPN15	O75808	1086 aa		13.79	□□□□□ -0.2
SS18-223	ENST00000583595	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.78	□□□□□ -0.2
SS18-223	ENST00000583595	APLP2	Q06481	763 aa		13.76	□□□□□ -0.21
SS18-223	ENST00000583595	TRH	P20396	242 aa	Predicted RBP	13.66	□□□□□ -0.22
SS18-223	ENST00000583595	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.62	□□□□□ -0.23
SS18-223	ENST00000583595	DSG3	P32926	999 aa		13.61	□□□□□ -0.23
SS18-223	ENST00000583595	EHMT2	Q96KQ7	1210 aa		13.51	□□□□□ -0.25
SS18-223	ENST00000583595	ABCB7	O75027	752 aa		13.5	□□□□□ -0.25
SS18-223	ENST00000583595	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-223	ENST00000583595	CSRNP3	Q8WYN3	585 aa		13.49	□□□□□ -0.25
SS18-223	ENST00000583595	ATXN8OS	P0DMR3	200 aa		13.41	□□□□□ -0.26
SS18-223	ENST00000583595	POLA2	Q14181	598 aa		13.37	□□□□□ -0.27
SS18-223	ENST00000583595	POTEH	Q6S545	545 aa		13.16	□□□□□ -0.3
SS18-223	ENST00000583595	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.11	□□□□□ -0.31
SS18-223	ENST00000583595	RBM42	Q9BTD8	480 aa	Known RBP	12.97	□□□□□ -0.33
SS18-223	ENST00000583595	FBLN2	P98095	1184 aa		12.95	□□□□□ -0.34
SS18-223	ENST00000583595	OSCAR	Q8IYS5	282 aa		12.92	□□□□□ -0.34
SS18-223	ENST00000583595	MKRN4P	Q13434	485 aa	Predicted RBP	12.89	□□□□□ -0.35
SS18-223	ENST00000583595	AKT1S1	Q96B36	256 aa		12.76	□□□□□ -0.37
SS18-223	ENST00000583595	SPDYE2B	A6NHP3	402 aa		12.73	□□□□□ -0.37
SS18-223	ENST00000583595	SPDYE6	P0CI01	402 aa		12.73	□□□□□ -0.37
SS18-223	ENST00000583595	SPDYE2	Q495Y8	402 aa		12.73	□□□□□ -0.37
SS18-223	ENST00000583595	ZNF692	Q9BU19	519 aa	Predicted RBP	12.66	□□□□□ -0.38
SS18-223	ENST00000583595	REM2	Q8IYK8	340 aa	Predicted RBP	12.65	□□□□□ -0.38
SS18-223	ENST00000583595	SSUH2	Q9Y2M2	353 aa		12.59	□□□□□ -0.39
SS18-223	ENST00000583595	CHRDL2	Q6WN34	429 aa		12.56	□□□□□ -0.4
SS18-223	ENST00000583595	PITPNM1	O00562	1244 aa		12.5	□□□□□ -0.41
SS18-223	ENST00000583595	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
SS18-223	ENST00000583595	SPDYE4	A6NLX3	237 aa		12.47	□□□□□ -0.41
SS18-223	ENST00000583595	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.43	□□□□□ -0.42
SS18-223	ENST00000583595	CLEC11A	Q9Y240	323 aa		12.41	□□□□□ -0.42
SS18-223	ENST00000583595	PIP4P2	Q8N4L2	257 aa		12.34	□□□□□ -0.43
SS18-223	ENST00000583595	FXR2	P51116	673 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
SS18-223	ENST00000583595	PRR29	P0C7W0	189 aa		12.25	□□□□□ -0.45
SS18-223	ENST00000583595	FKBP8	Q14318	412 aa		12.21	□□□□□ -0.45
SS18-223	ENST00000583595	STAG3	Q9UJ98	1225 aa		12.2	□□□□□ -0.46
SS18-223	ENST00000583595	PRKAR2A	P13861	404 aa	Known RBP	12.19	□□□□□ -0.46
SS18-223	ENST00000583595	PROM2	Q8N271	834 aa		12.19	□□□□□ -0.46
SS18-223	ENST00000583595	CHADL	Q6NUI6	762 aa		12.13	□□□□□ -0.47
SS18-223	ENST00000583595	HAX1	O00165	279 aa		12.04	□□□□□ -0.48
SS18-223	ENST00000583595	CREBZF	Q9NS37	354 aa		12.02	□□□□□ -0.49
SS18-223	ENST00000583595	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.98	□□□□□ -0.49
SS18-223	ENST00000583595	C19orf67	A6NJJ6	358 aa		11.91	□□□□□ -0.5
SS18-223	ENST00000583595	EVX2	Q03828	476 aa		11.91	□□□□□ -0.5
SS18-223	ENST00000583595	MIER1	Q8N108	512 aa		11.87	□□□□□ -0.51
SS18-223	ENST00000583595	SP7	Q8TDD2	431 aa	Predicted RBP	11.87	□□□□□ -0.51
SS18-223	ENST00000583595	MNX1	P50219	401 aa	Predicted RBP	11.85	□□□□□ -0.51
SS18-223	ENST00000583595	FBXO3	Q9UK99	471 aa		11.85	□□□□□ -0.51
SS18-223	ENST00000583595	PLEKHG5	O94827	1062 aa		11.82	□□□□□ -0.52
SS18-223	ENST00000583595	CD44	P16070	742 aa	Known RBP	11.82	□□□□□ -0.52
SS18-223	ENST00000583595	NPM1	P06748	294 aa	Known RBP eCLIP	11.81	□□□□□ -0.52
SS18-223	ENST00000583595	PLCD3	Q8N3E9	789 aa		11.81	□□□□□ -0.52
SS18-223	ENST00000583595	ZRANB1	Q9UGI0	708 aa		11.72	□□□□□ -0.53
SS18-223	ENST00000583595	VASP	P50552	380 aa	Predicted RBP	11.7	□□□□□ -0.54
SS18-223	ENST00000583595	SLC24A1	O60721	1099 aa		11.69	□□□□□ -0.54
SS18-223	ENST00000583595	PAK3	O75914	559 aa	Predicted RBP	11.69	□□□□□ -0.54
SS18-223	ENST00000583595	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.68	□□□□□ -0.54
SS18-223	ENST00000583595	GABBR2	O75899	941 aa		11.66	□□□□□ -0.54
SS18-223	ENST00000583595	ZNF579	Q8NAF0	562 aa	Known RBP	11.64	□□□□□ -0.55
SS18-223	ENST00000583595	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.63	□□□□□ -0.55
SS18-223	ENST00000583595	RASEF	Q8IZ41	740 aa		11.6	□□□□□ -0.55
SS18-223	ENST00000583595	KLHL34	Q8N239	644 aa		11.59	□□□□□ -0.55
SS18-223	ENST00000583595	RTN4	Q9NQC3	1192 aa	Known RBP	11.59	□□□□□ -0.55
SS18-223	ENST00000583595	NUBP1	P53384	320 aa		11.58	□□□□□ -0.56

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