Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.94■□□□□ 0.94
CDH11P55287 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDH11P55287 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
CDH11P55287 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH11P55287 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH11P55287 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH11P55287 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.93■□□□□ 0.94
CDH11P55287 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CDH11P55287 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDH11P55287 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.93■□□□□ 0.94
CDH11P55287 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.92■□□□□ 0.94
CDH11P55287 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.92■□□□□ 0.94
CDH11P55287 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDH11P55287 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH11P55287 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH11P55287 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDH11P55287 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.91■□□□□ 0.94
CDH11P55287 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDH11P55287 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH11P55287 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDH11P55287 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.9■□□□□ 0.94
CDH11P55287 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.89■□□□□ 0.94
CDH11P55287 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDH11P55287 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CDH11P55287 AC079834.2-201ENST00000609776 1949 ntBASIC20.89■□□□□ 0.93
CDH11P55287 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 YBX1P4-201ENST00000392794 808 ntBASIC20.89■□□□□ 0.93
CDH11P55287 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CDH11P55287 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CDH11P55287 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDH11P55287 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.89■□□□□ 0.93
CDH11P55287 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.88■□□□□ 0.93
CDH11P55287 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CDH11P55287 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.88■□□□□ 0.93
CDH11P55287 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.88■□□□□ 0.93
CDH11P55287 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDH11P55287 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.87■□□□□ 0.93
CDH11P55287 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH11P55287 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.87■□□□□ 0.93
CDH11P55287 C9orf163-202ENST00000624034 2573 ntBASIC20.87■□□□□ 0.93
CDH11P55287 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDH11P55287 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDH11P55287 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH11P55287 AL451085.2-201ENST00000605085 799 ntBASIC20.86■□□□□ 0.93
CDH11P55287 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CDH11P55287 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDH11P55287 FOXO3B-201ENST00000395675 1928 ntBASIC20.86■□□□□ 0.93
CDH11P55287 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CDH11P55287 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CDH11P55287 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH11P55287 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.85■□□□□ 0.93
CDH11P55287 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH11P55287 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.85■□□□□ 0.93
CDH11P55287 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH11P55287 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CDH11P55287 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH11P55287 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH11P55287 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CDH11P55287 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CDH11P55287 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH11P55287 PVT1_1.1-201ENST00000615125 194 ntBASIC20.84■□□□□ 0.93
CDH11P55287 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH11P55287 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms