Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 GTPBP3-221ENST00000600610 1105 ntTSL 1 (best)26.28■■□□□ 1.87e-7■■■■□ 21.8
YBX3P16989 GTPBP3-223ENST00000600995 812 ntTSL 226.28■■□□□ 1.87e-7■■■■□ 21.8
YBX3P16989 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.18■■□□□ 1.787e-7■■■■□ 21.8
YBX3P16989 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.96■■□□□ 1.757e-7■■■■□ 21.8
YBX3P16989 GTPBP3-205ENST00000594018 934 ntTSL 524.67■■□□□ 1.547e-7■■■■□ 21.8
YBX3P16989 GTPBP3-213ENST00000596166 1024 ntTSL 324.67■■□□□ 1.547e-7■■■■□ 21.8
YBX3P16989 GTPBP3-211ENST00000596001 1072 ntTSL 524.52■■□□□ 1.527e-7■■■■□ 21.8
YBX3P16989 GTPBP3-214ENST00000596218 897 ntTSL 324.47■■□□□ 1.517e-7■■■■□ 21.8
YBX3P16989 GTPBP3-225ENST00000601261 606 ntTSL 424.45■■□□□ 1.57e-7■■■■□ 21.8
YBX3P16989 GTPBP3-228ENST00000602165 617 ntTSL 424.36■■□□□ 1.497e-7■■■■□ 21.8
YBX3P16989 MECOM-213ENST00000485957 895 ntTSL 1 (best)24.18■■□□□ 1.467e-7■■■■□ 21.8
YBX3P16989 GTPBP3-206ENST00000594345 1004 ntTSL 324.01■■□□□ 1.437e-7■■■■□ 21.8
YBX3P16989 GTPBP3-224ENST00000601213 584 ntTSL 423.33■■□□□ 1.337e-7■■■■□ 21.8
YBX3P16989 GTPBP3-215ENST00000596941 678 ntTSL 223.33■■□□□ 1.337e-7■■■■□ 21.8
YBX3P16989 GTPBP3-220ENST00000599429 592 ntTSL 423.1■■□□□ 1.297e-7■■■■□ 21.8
YBX3P16989 GTPBP3-204ENST00000593297 555 ntTSL 423.05■■□□□ 1.287e-7■■■■□ 21.8
YBX3P16989 GTPBP3-219ENST00000599329 582 ntTSL 320.25■□□□□ 0.837e-7■■■■□ 21.8
YBX3P16989 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.86■□□□□ 0.777e-7■■■■□ 21.8
YBX3P16989 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.69■□□□□ 0.587e-7■■■■□ 21.8
YBX3P16989 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.557e-7■■■■□ 21.8
YBX3P16989 TBC1D24-202ENST00000562105 344 ntTSL 317.99■□□□□ 0.477e-7■■■■□ 21.8
YBX3P16989 GTPBP3-216ENST00000598038 2917 ntTSL 517.95■□□□□ 0.467e-7■■■■□ 21.8
YBX3P16989 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.1■□□□□ 0.177e-7■■■■□ 21.8
YBX3P16989 AC020915.6-202ENST00000637310 1463 ntAPPRIS ALT2 TSL 515.66■□□□□ 0.17e-7■■■■□ 21.8
YBX3P16989 TMEM18-205ENST00000432667 2572 ntTSL 515.52■□□□□ 0.077e-7■■■■□ 21.8
YBX3P16989 TBC1D24-206ENST00000569874 3061 ntTSL 515.07■□□□□ 07e-7■■■■□ 21.8
YBX3P16989 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.047e-7■■■■□ 21.8
YBX3P16989 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.057e-7■■■■□ 21.8
YBX3P16989 TBC1D24-208ENST00000630263 4180 ntTSL 514.23□□□□□ -0.137e-7■■■■□ 21.8
YBX3P16989 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.02□□□□□ -0.167e-7■■■■□ 21.8
YBX3P16989 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.177e-7■■■■□ 21.8
YBX3P16989 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.217e-7■■■■□ 21.8
YBX3P16989 CISD1-203ENST00000488388 881 ntTSL 513.53□□□□□ -0.247e-7■■■■□ 21.8
YBX3P16989 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.33□□□□□ -0.287e-7■■■■□ 21.8
YBX3P16989 EEF1A1P6-201ENST00000434005 1384 ntBASIC13.24□□□□□ -0.297e-7■■■■□ 21.8
YBX3P16989 AC020915.2-201ENST00000591325 4227 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.37e-7■■■■□ 21.8
YBX3P16989 TMEM18-201ENST00000281017 2762 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.417e-7■■■■□ 21.8
YBX3P16989 AC074033.1-201ENST00000418623 410 ntBASIC11.96□□□□□ -0.497e-7■■■■□ 21.8
YBX3P16989 AC020915.6-201ENST00000637233 3042 ntAPPRIS P5 TSL 5 BASIC11.96□□□□□ -0.57e-7■■■■□ 21.8
YBX3P16989 ZNF8-201ENST00000621650 9128 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.627e-7■■■■□ 21.8
YBX3P16989 STEAP1B-204ENST00000439708 797 ntTSL 38.78□□□□□ -17e-7■■■■□ 21.8
YBX3P16989 MFSD1-205ENST00000465624 1029 ntTSL 38.62□□□□□ -1.031e-6■■■■□ 21.8
YBX3P16989 CISD1-204ENST00000489785 577 ntTSL 27.59□□□□□ -1.197e-7■■■■□ 21.8
YBX3P16989 C18orf8-213ENST00000593081 675 ntTSL 27.58□□□□□ -1.27e-7■■■■□ 21.8
YBX3P16989 C18orf8-205ENST00000589409 706 ntTSL 57.24□□□□□ -1.257e-7■■■■□ 21.8
YBX3P16989 DPP8-208ENST00000558559 1083 ntTSL 1 (best)6.91□□□□□ -1.37e-7■■■■□ 21.8
YBX3P16989 C18orf8-210ENST00000591367 721 ntTSL 36.77□□□□□ -1.337e-7■■■■□ 21.8
YBX3P16989 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.347e-7■■■■□ 21.8
YBX3P16989 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.67□□□□□ -1.347e-7■■■■□ 21.8
YBX3P16989 MFSD1-212ENST00000477743 581 ntTSL 36.08□□□□□ -1.441e-6■■■■□ 21.8
YBX3P16989 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.91□□□□□ -1.467e-7■■■■□ 21.8
YBX3P16989 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.59□□□□□ -1.517e-7■■■■□ 21.8
YBX3P16989 MECOM-214ENST00000486748 393 ntTSL 55.57□□□□□ -1.527e-7■■■■□ 21.8
YBX3P16989 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.557e-7■■■■□ 21.8
YBX3P16989 Y_RNA.16-201ENST00000362421 102 ntBASIC4.88□□□□□ -1.637e-7■■■■□ 21.8
YBX3P16989 DPP8-205ENST00000395652 3082 ntTSL 53.62□□□□□ -1.837e-7■■■■□ 21.8
YBX3P16989 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.052e-7■■■■□ 21.8
YBX3P16989 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.992e-7■■■■□ 21.8
YBX3P16989 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.85■□□□□ 0.932e-7■■■■□ 21.8
YBX3P16989 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.63■□□□□ 0.732e-7■■■■□ 21.8
YBX3P16989 RELA-208ENST00000526283 2004 ntTSL 515.5■□□□□ 0.072e-7■■■■□ 21.8
YBX3P16989 RELA-205ENST00000525693 3183 ntTSL 1 (best) BASIC11.28□□□□□ -0.62e-7■■■■□ 21.8
YBX3P16989 SMAP2-202ENST00000372718 2939 ntAPPRIS P1 TSL 1 (best)18.09■□□□□ 0.495e-8■■■■□ 21.7
YBX3P16989 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.19■□□□□ 0.981e-9■■■■□ 21.7
YBX3P16989 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.41e-9■■■■□ 21.7
YBX3P16989 IFITM2-203ENST00000527146 634 ntTSL 316.25■□□□□ 0.191e-9■■■■□ 21.7
YBX3P16989 IFITM2-202ENST00000399817 659 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.151e-9■■■■□ 21.7
YBX3P16989 IFITM2-206ENST00000616316 892 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.261e-9■■■■□ 21.7
YBX3P16989 SPAG9-207ENST00000506500 828 ntTSL 29.42□□□□□ -0.91e-7■■■■□ 21.7
YBX3P16989 POLR3C-202ENST00000369294 1590 ntTSL 1 (best) BASIC14.85□□□□□ -0.035e-7■■■■□ 21.7
YBX3P16989 POLR3C-201ENST00000334163 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.15e-7■■■■□ 21.7
YBX3P16989 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.628e-7■■■■□ 21.7
YBX3P16989 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC28.31■■■□□ 2.128e-7■■■■□ 21.7
YBX3P16989 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.048e-7■■■■□ 21.7
YBX3P16989 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.5■■□□□ 1.518e-7■■■■□ 21.7
YBX3P16989 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.918e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-203ENST00000524770 565 ntTSL 325.73■■□□□ 1.717e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-209ENST00000532124 629 ntTSL 425.73■■□□□ 1.717e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-206ENST00000530346 594 ntTSL 423.74■■□□□ 1.397e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.9■■□□□ 1.267e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-208ENST00000531092 744 ntTSL 319.28■□□□□ 0.687e-7■■■■□ 21.7
YBX3P16989 GMDS-AS1-213ENST00000534441 738 ntTSL 3 BASIC15.37■□□□□ 0.057e-7■■■■□ 21.7
YBX3P16989 IFNGR2-206ENST00000545369 966 ntTSL 525.06■■□□□ 1.63e-7■■■■□ 21.7
YBX3P16989 WDR82-201ENST00000296490 4293 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.492e-7■■■■□ 21.7
YBX3P16989 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.01■□□□□ 0.956e-9■■■■□ 21.7
YBX3P16989 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15.78■□□□□ 0.123e-8■■■■□ 21.6
YBX3P16989 RNF41-211ENST00000552656 1193 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -03e-8■■■■□ 21.6
YBX3P16989 RNF41-203ENST00000547967 2552 ntTSL 1 (best)13.03□□□□□ -0.323e-8■■■■□ 21.6
YBX3P16989 RNF41-201ENST00000345093 5596 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.83e-8■■■■□ 21.6
YBX3P16989 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.973e-8■■■■□ 21.6
YBX3P16989 POLR2I-203ENST00000586439 744 ntTSL 526.21■■□□□ 1.791e-8■■■■□ 21.6
YBX3P16989 POLR2I-204ENST00000586789 993 ntTSL 525.72■■□□□ 1.711e-8■■■■□ 21.6
YBX3P16989 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.961e-8■■■■□ 21.6
YBX3P16989 POLR2I-206ENST00000589591 542 ntTSL 219.07■□□□□ 0.641e-8■■■■□ 21.6
YBX3P16989 POLR2I-202ENST00000585842 368 ntTSL 215.72■□□□□ 0.111e-8■■■■□ 21.6
YBX3P16989 POLR2I-207ENST00000592962 493 ntTSL 215.02■□□□□ -01e-8■■■■□ 21.6
YBX3P16989 SMAP2-205ENST00000539317 2501 ntTSL 2 BASIC13.24□□□□□ -0.293e-8■■■■□ 21.6
YBX3P16989 SMAP2-206ENST00000614549 2570 ntTSL 1 (best) BASIC10.01□□□□□ -0.813e-8■■■■□ 21.6
YBX3P16989 SMAP2-201ENST00000372708 2473 ntTSL 1 (best)9.99□□□□□ -0.813e-8■■■■□ 21.6
YBX3P16989 CAVIN2-201ENST00000304141 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.791e-6■■■■□ 21.6
Retrieved 100 of 29,075 protein–RNA pairs in 873 ms