Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
COL6A5A8TX70 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL6A5A8TX70 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.26■□□□□ 0.51
COL6A5A8TX70 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A5A8TX70 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.25■□□□□ 0.51
COL6A5A8TX70 TSPY26P-201ENST00000476365 1326 ntBASIC18.25■□□□□ 0.51
COL6A5A8TX70 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.25■□□□□ 0.51
COL6A5A8TX70 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.25■□□□□ 0.51
COL6A5A8TX70 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL6A5A8TX70 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL6A5A8TX70 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A5A8TX70 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A5A8TX70 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A5A8TX70 AC009102.2-201ENST00000606772 1639 ntBASIC18.24■□□□□ 0.51
COL6A5A8TX70 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.24■□□□□ 0.51
COL6A5A8TX70 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A5A8TX70 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
COL6A5A8TX70 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A5A8TX70 AL109923.1-201ENST00000618799 583 ntBASIC18.23■□□□□ 0.51
COL6A5A8TX70 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.23■□□□□ 0.51
COL6A5A8TX70 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A5A8TX70 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
COL6A5A8TX70 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A5A8TX70 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A5A8TX70 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.23■□□□□ 0.51
COL6A5A8TX70 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A5A8TX70 AC016769.1-201ENST00000409132 1010 ntBASIC18.22■□□□□ 0.51
COL6A5A8TX70 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A5A8TX70 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A5A8TX70 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.22■□□□□ 0.51
COL6A5A8TX70 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A5A8TX70 MIR3181-201ENST00000578512 73 ntBASIC18.22■□□□□ 0.51
COL6A5A8TX70 MIR4651-201ENST00000582622 73 ntBASIC18.22■□□□□ 0.51
COL6A5A8TX70 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A5A8TX70 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A5A8TX70 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.21■□□□□ 0.51
COL6A5A8TX70 AC073111.5-205ENST00000641717 521 ntBASIC18.21■□□□□ 0.51
COL6A5A8TX70 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A5A8TX70 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A5A8TX70 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A5A8TX70 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A5A8TX70 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.21■□□□□ 0.51
COL6A5A8TX70 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.21■□□□□ 0.51
COL6A5A8TX70 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
COL6A5A8TX70 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A5A8TX70 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A5A8TX70 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.2■□□□□ 0.5
COL6A5A8TX70 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A5A8TX70 AC006455.2-201ENST00000429931 906 ntBASIC18.2■□□□□ 0.5
COL6A5A8TX70 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A5A8TX70 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL6A5A8TX70 AC006970.2-201ENST00000450065 779 ntBASIC18.2■□□□□ 0.5
COL6A5A8TX70 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A5A8TX70 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A5A8TX70 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A5A8TX70 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A5A8TX70 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A5A8TX70 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A5A8TX70 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A5A8TX70 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A5A8TX70 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 KRT18P61-201ENST00000585825 1298 ntBASIC18.19■□□□□ 0.5
COL6A5A8TX70 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
COL6A5A8TX70 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A5A8TX70 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 AC245100.8-202ENST00000629247 1058 ntBASIC18.18■□□□□ 0.5
COL6A5A8TX70 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A5A8TX70 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A5A8TX70 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A5A8TX70 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A5A8TX70 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A5A8TX70 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
COL6A5A8TX70 AC090877.2-201ENST00000558441 1738 ntBASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms