Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.4■□□□□ 0.7
SMC4Q9NTJ3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SMC4Q9NTJ3 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 USP32P1-208ENST00000506594 1164 ntBASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 AP001889.1-201ENST00000525414 633 ntBASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 AC004466.1-201ENST00000599515 1080 ntBASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SMC4Q9NTJ3 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 NME2P1-201ENST00000426182 414 ntBASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.38■□□□□ 0.69
SMC4Q9NTJ3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms