Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.92□□□□□ -0.02
PKNOX1P55347 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PKNOX1P55347 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.92□□□□□ -0.02
PKNOX1P55347 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PKNOX1P55347 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
PKNOX1P55347 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 AP001267.2-201ENST00000532619 2086 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
PKNOX1P55347 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AL139400.1-201ENST00000366220 510 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC027369.6-201ENST00000525520 931 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 TIMM17BP1-201ENST00000545713 516 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 SAMD11P1-201ENST00000571429 661 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.91□□□□□ -0.02
PKNOX1P55347 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 AC004461.2-201ENST00000629517 803 ntBASIC14.91□□□□□ -0.02
PKNOX1P55347 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PKNOX1P55347 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
PKNOX1P55347 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PKNOX1P55347 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
PKNOX1P55347 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 AC107890.1-201ENST00000422478 521 ntBASIC14.9□□□□□ -0.02
PKNOX1P55347 DNAJB3-202ENST00000449667 1266 ntBASIC14.9□□□□□ -0.02
PKNOX1P55347 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.9□□□□□ -0.02
PKNOX1P55347 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PKNOX1P55347 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms