Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH13P55290 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH13P55290 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH13P55290 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.85□□□□□ -0.03
CDH13P55290 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
CDH13P55290 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.85□□□□□ -0.03
CDH13P55290 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH13P55290 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 GAPDHP40-201ENST00000505218 1006 ntBASIC14.85□□□□□ -0.03
CDH13P55290 AL391069.4-201ENST00000609583 481 ntBASIC14.85□□□□□ -0.03
CDH13P55290 AC008738.7-201ENST00000609744 511 ntBASIC14.85□□□□□ -0.03
CDH13P55290 AL390754.1-201ENST00000619088 582 ntBASIC14.85□□□□□ -0.03
CDH13P55290 AC004840.1-201ENST00000636359 365 ntBASIC14.85□□□□□ -0.03
CDH13P55290 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH13P55290 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH13P55290 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CDH13P55290 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH13P55290 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH13P55290 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH13P55290 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.84□□□□□ -0.03
CDH13P55290 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH13P55290 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 BTBD7P1-201ENST00000447253 1453 ntBASIC14.84□□□□□ -0.03
CDH13P55290 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH13P55290 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH13P55290 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.84□□□□□ -0.03
CDH13P55290 AC135586.1-201ENST00000539323 574 ntBASIC14.84□□□□□ -0.03
CDH13P55290 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH13P55290 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH13P55290 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 SRD5A3P1-201ENST00000603021 949 ntBASIC14.84□□□□□ -0.03
CDH13P55290 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 AL137783.1-201ENST00000623494 1896 ntBASIC14.84□□□□□ -0.03
CDH13P55290 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CDH13P55290 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
CDH13P55290 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH13P55290 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH13P55290 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
CDH13P55290 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.83□□□□□ -0.03
CDH13P55290 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDH13P55290 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.83□□□□□ -0.03
CDH13P55290 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CDH13P55290 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CDH13P55290 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
CDH13P55290 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDH13P55290 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
CDH13P55290 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH13P55290 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH13P55290 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH13P55290 AC005840.4-201ENST00000541242 2494 ntBASIC14.83□□□□□ -0.04
CDH13P55290 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH13P55290 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
CDH13P55290 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDH13P55290 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms